Solution structure of Rv2377c-founding member of the MbtH-like protein family

被引:27
作者
Buchko, Garry W. [1 ]
Kim, Chang-Yub [2 ]
Terwilliger, Thomas C. [2 ]
Myler, Peter J. [3 ,4 ,5 ]
机构
[1] Pacific NW Natl Lab, Div Biol Sci, Richland, WA 99352 USA
[2] Los Alamos Natl Lab, Biosci Div, Los Alamos, NM 87545 USA
[3] Seattle Biomed Res Inst, Seattle, WA 98109 USA
[4] Univ Washington, Dept Med Educ & Biomed Informat, Seattle, WA 98195 USA
[5] Univ Washington, Dept Global Hlth, Seattle, WA 98195 USA
关键词
Tuberculosis; Siderophore assembly; Mycobactin; Circular dichroism; Structural genomics; Protein dynamics; MYCOBACTERIUM-TUBERCULOSIS; CHEMICAL-SHIFT; BACKBONE DYNAMICS; IRON-METABOLISM; BIOSYNTHESIS; SIDEROPHORES; ACQUISITION; CLUSTER; GROWTH; FIELD;
D O I
10.1016/j.tube.2010.04.002
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
071005 [微生物学]; 100108 [医学免疫学];
摘要
The Mycobacterium tuberculosis protein Rv2377c (71 residues, MW = 8.4 kDa) has been characterized using nuclear magnetic resonance (NMR) and circular dichroism (CD) spectroscopy. Rv2377c was the first identified member of the MbtH-like family of proteins. MbtH-like proteins have been implicated in siderophore biosynthesis, however, their precise biochemical function remain unknown. Size exclusion chromatography and NMR spectroscopy show that Rv2377c is a monomer in solution. Circular dichroism spectroscopy indicates that Rv2377c unfolds upon heating and will reversibly fold into its native conformation upon cooling. Using NMR-based methods the solution structure of Rv2377c was determined and some of the dynamic properties of the protein studied. The protein contains a three-strand, anti-parallel beta-sheet (beta 3:beta 1:beta 2) nestled against one C-terminal alpha-helix (S44-N55). Weak or absent amide cross peaks in the H-1-N-15 HSQC spectrum for many of the beta 1 and beta 2 residues suggest intermediate motion on the ms to ms time scale at the beta 1:beta 2 interface. Amide cross peaks in the H-1-N-15 HSQC spectrum are absent for all but one residue at the C-terminus (W56eD71), a region that includes a highly conserved sequence WXDXR, suggesting this region is intrinsically disordered. The latter observation differs with the crystal structure of another MbtH-like protein, PA2412 from Pseudomonas aeruginosa, where a second ordered a-helix was observed at the extreme C-terminus. (C) 2010 Elsevier Ltd. All rights reserved.
引用
收藏
页码:245 / 251
页数:7
相关论文
共 52 条
[1]
Averting epidemics of extensively drug-resistant tuberculosis [J].
Basu, Sanjay ;
Friedland, Gerald H. ;
Medlock, Jan ;
Andrews, Jason R. ;
Shah, N. Sarita ;
Gandhi, Neel R. ;
Moll, Anthony ;
Moodley, Prashini ;
Sturm, A. Willem ;
Galvani, Alison P. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 (18) :7672-7677
[2]
Evaluating protein structures determined by structural genomics consortia [J].
Bhattacharya, Aneerban ;
Tejero, Roberto ;
Montelione, Gaetano T. .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2007, 66 (04) :778-795
[3]
Solution structure of the conserved hypothetical protein Rv2302 from Mycobacterium tuberculosis [J].
Buchko, Garry W. ;
Kim, Chang-Yub ;
Terwilliger, Thomas C. ;
Kennedy, Michael A. .
JOURNAL OF BACTERIOLOGY, 2006, 188 (16) :5993-6001
[4]
Solution-state NMR investigation of DNA binding interactions in Escherichia coli formamidopyrimidine-DNA glycosylase (Fpg):: a dynamic description of the DNA/protein interface [J].
Buchko, GW ;
McAteer, K ;
Wallace, SS ;
Kennedy, MA .
DNA REPAIR, 2005, 4 (03) :327-339
[5]
Spectroscopic studies of zinc(II)- and cobalt(II)-associated Escherichia coli formamidopyrimidine-DNA glycosylase:: Extended X-ray absorption fine structure evidence for a metal-binding domain [J].
Buchko, GW ;
Hess, NJ ;
Bandaru, V ;
Wallace, SS ;
Kennedy, MA .
BIOCHEMISTRY, 2000, 39 (40) :12441-12449
[6]
CONFORMATION OF TWISTED BETA-PLEATED SHEETS IN PROTEINS [J].
CHOTHIA, C .
JOURNAL OF MOLECULAR BIOLOGY, 1973, 75 (02) :295-302
[7]
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence [J].
Cole, ST ;
Brosch, R ;
Parkhill, J ;
Garnier, T ;
Churcher, C ;
Harris, D ;
Gordon, SV ;
Eiglmeier, K ;
Gas, S ;
Barry, CE ;
Tekaia, F ;
Badcock, K ;
Basham, D ;
Brown, D ;
Chillingworth, T ;
Connor, R ;
Davies, R ;
Devlin, K ;
Feltwell, T ;
Gentles, S ;
Hamlin, N ;
Holroyd, S ;
Hornby, T ;
Jagels, K ;
Krogh, A ;
McLean, J ;
Moule, S ;
Murphy, L ;
Oliver, K ;
Osborne, J ;
Quail, MA ;
Rajandream, MA ;
Rogers, J ;
Rutter, S ;
Seeger, K ;
Skelton, J ;
Squares, R ;
Squares, S ;
Sulston, JE ;
Taylor, K ;
Whitehead, S ;
Barrell, BG .
NATURE, 1998, 393 (6685) :537-+
[8]
Protein backbone angle restraints from searching a database for chemical shift and sequence homology [J].
Cornilescu, G ;
Delaglio, F ;
Bax, A .
JOURNAL OF BIOMOLECULAR NMR, 1999, 13 (03) :289-302
[9]
Creighton T.E., 1993, PROTEINS STRUCTURE M, V2nd
[10]
Iron acquisition and metabolism by mycobacteria [J].
De Voss, JJ ;
Rutter, K ;
Schroeder, BG ;
Barry, CE .
JOURNAL OF BACTERIOLOGY, 1999, 181 (15) :4443-4451