Virus movement maintains local virus population diversity

被引:55
作者
Snyder, Jamie C.
Wiedenheft, Blake
Lavin, Matthew
Roberto, Francisco F.
Spuhler, Josh
Ortmann, Alice C.
Douglas, Trevor [1 ]
Young, Mark
机构
[1] Montana State Univ, Thermal Biol Inst, Bozeman, MT 59717 USA
[2] Montana State Univ, Dept Microbiol, Bozeman, MT 59717 USA
[3] Montana State Univ, Dept Plant Sci & Plant Pathol, Bozeman, MT 59717 USA
[4] Montana State Univ, Dept Chem & Biochem, Bozeman, MT 59717 USA
[5] Idaho Natl Lab, Idaho Falls, ID 83415 USA
关键词
virus dynamics; virus phylogeny; archaeal viruses; sulfolobus spindle-shaped virus; sulfolobus islandicus rod-shaped virus;
D O I
10.1073/pnas.0709445104
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Viruses are the largest reservoir of genetic material on the planet, yet little is known about the population dynamics of any virus within its natural environment. Over a 2-year period, we monitored the diversity of two archaeal viruses found in hot springs within Yellowstone National Park (YNP). Both temporal phylogeny and neutral biodiversity models reveal that virus diversity in these local environments is not being maintained by mutation but rather by high rates of immigration from a globally distributed metacommunity. These results indicate that geographically isolated hot springs are readily able to exchange viruses. The importance of virus movement is supported by the detection of virus particles in air samples collected over YNP hot springs and by their detection in metacommunity sequencing projects conducted in the Sargasso Sea. Rapid rates of virus movement are not expected to be unique to these archaeal viruses but rather a common feature among virus metacommunities. The finding that virus immigration rather than mutation can dominate community structure has significant implications for understanding virus circulation and the role that viruses play in ecology and evolution by providing a reservoir of mobile genetic material.
引用
收藏
页码:19102 / 19107
页数:6
相关论文
共 29 条
  • [1] PHACCS, an online tool for estimating the structure and diversity of uncultured viral communities using metagenomic information
    Angly, F
    Rodriguez-Brito, B
    Bangor, D
    McNairnie, P
    Breitbart, M
    Salamon, P
    Felts, B
    Nulton, J
    Mahaffy, J
    Rohwer, F
    [J]. BMC BIOINFORMATICS, 2005, 6 (1)
  • [2] [Anonymous], 2006, R LANG ENV STAT COMP
  • [3] Review and re-analysis of domain-specific 16S primers
    Baker, GC
    Smith, JJ
    Cowan, DA
    [J]. JOURNAL OF MICROBIOLOGICAL METHODS, 2003, 55 (03) : 541 - 555
  • [4] Here a virus, there a virus, everywhere the same virus?
    Breitbart, M
    Rohwer, F
    [J]. TRENDS IN MICROBIOLOGY, 2005, 13 (06) : 278 - 284
  • [5] Towards a really unified theory for metacommunities
    Chase, JM
    [J]. FUNCTIONAL ECOLOGY, 2005, 19 (01) : 182 - 186
  • [6] Chavez-Sanchez C, 2000, AQUACULT NUTR, V6, P1
  • [7] Molecular epidemiology - HIV-1 and HCV sequences from Libyan outbreak
    de Oliveira, Tulio
    Pybus, Oliver G.
    Rambaut, Andrew
    Salemi, Marco
    Cassol, Sharon
    Ciccozzi, Massimo
    Rezza, Giovanni
    Gattinara, Guido Castelli
    D'Arrigo, Roberta
    Amicosante, Massimo
    Perrin, Luc
    Colizzi, Vittorio
    Perno, Carlo Federico
    [J]. NATURE, 2006, 444 (7121) : 836 - 837
  • [8] A new sampling formula for neutral biodiversity
    Etienne, RS
    [J]. ECOLOGY LETTERS, 2005, 8 (03) : 253 - 260
  • [9] Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution
    Ghedin, E
    Sengamalay, NA
    Shumway, M
    Zaborsky, J
    Feldblyum, T
    Subbu, V
    Spiro, DJ
    Sitz, J
    Koo, H
    Bolotov, P
    Dernovoy, D
    Tatusova, T
    Bao, YM
    St George, K
    Taylor, J
    Lipman, DJ
    Fraser, CM
    Taubenberger, JK
    Salzberg, SL
    [J]. NATURE, 2005, 437 (7062) : 1162 - 1166
  • [10] Unifying the epidemiological and evolutionary dynamics of pathogens
    Grenfell, BT
    Pybus, OG
    Gog, JR
    Wood, JLN
    Daly, JM
    Mumford, JA
    Holmes, EC
    [J]. SCIENCE, 2004, 303 (5656) : 327 - 332