Bacterial genome sequencing and its use in infectious diseases

被引：59

作者：

Fournier, Pierre-Edouard ^{[1
]}

Drancourt, Michel ^{[1
]}

Raoult, Didier ^{[1
]}

机构：

[1] Univ Mediterranee, Fac Med, CNRS,UMR 6020,IFR 48, Unite Rickettsies, F-13385 Marseille 5, France

来源：

LANCET INFECTIOUS DISEASES | 2007年 / 7卷 / 11期

关键词：

D O I：

10.1016/S1473-3099(07)70260-8

中图分类号：

R51 [传染病];

学科分类号：

100401 ;

摘要：

The availability of genome sequences is revolutionising the fields of bacteriology and infectious diseases. By mid-2007, 479 bacterial genomes from 352 distinct species have been sequenced, including representatives of all notable human pathogens. Additionally, the genomes of several strains from each of 55 species have been sequenced. This tremendous amount of genomic data has led to unprecedented advances in pathogen diagnosis, genotyping, detection of virulence, and detection of resistance to antibiotics. We review current achievements in these fields and potential developments in the future for the clinical microbiology laboratory.

引用

页码：711 / 723

页数：13

共 176 条

[1] Multilocus variable-number tandem repeat typing of Mycobacterium ulcerans [J].

Ablordey, A ;

Swings, J ;

Hubans, C ;

Chemlal, K ;

Locht, C ;

Portaels, F ;

Supply, P .

JOURNAL OF CLINICAL MICROBIOLOGY, 2005, 43 (04) :1546-1551

[2] Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis [J].

Achtman, M ;

Zurth, K ;

Morelli, C ;

Torrea, G ;

Guiyoule, A ;

Carniel, E .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (24) :14043-14048

[3] Microevolution and history of the plague bacillus, Yersinia pestis [J].

Achtman, M ;

Morelli, G ;

Zhu, PX ;

Wirth, T ;

Diehl, I ;

Kusecek, B ;

Vogler, AJ ;

Wagner, DM ;

Allender, CJ ;

Easterday, WR ;

Chenal-Francisque, V ;

Worsham, P ;

Thomson, NR ;

Parkhill, J ;

Lindler, LE ;

Carniel, E ;

Keim, P .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (51) :17837-17842

[4] Diversity in a variable-number tandem repeat from Yersinia pestis [J].

Adair, DM ;

Worsham, PL ;

Hill, KK ;

Klevytska, AM ;

Jackson, PJ ;

Friedlander, AM ;

Keim, P .

JOURNAL OF CLINICAL MICROBIOLOGY, 2000, 38 (04) :1516-1519

[5] The genome sequence of Rickettsia prowazekii and the origin of mitochondria [J].

Andersson, SGE ;

Zomorodipour, A ;

Andersson, JO ;

Sicheritz-Pontén, T ;

Alsmark, UCM ;

Podowski, RM ;

Näslund, AK ;

Eriksson, AS ;

Winkler, HH ;

Kurland, CG .

NATURE, 1998, 396 (6707) :133-140

[6] A diarylquinoline drug active on the ATP synthase of Mycobacterium tuberculosis [J].

Andries, K ;

Verhasselt, P ;

Guillemont, J ;

Göhlmann, HWH ;

Neefs, JM ;

Winkler, H ;

Van Gestel, J ;

Timmerman, P ;

Zhu, M ;

Lee, E ;

Williams, P ;

de Chaffoy, D ;

Huitric, E ;

Hoffner, S ;

Cambau, E ;

Truffot-Pernot, C ;

Lounis, N ;

Jarlier, V .

SCIENCE, 2005, 307 (5707) :223-227

[7] Towards an immunodiagnostic test for leprosy [J].

Araoz, Romulo ;

Honore, Nadine ;

Banu, Sayera ;

Demangel, Caroline ;

Cissoko, Yakouba ;

Arama, Charles ;

Uddin, Mohammad Khaja Mafij ;

Hadi, S. K. Abdul ;

Monot, Marc ;

Cho, Sang-Nae ;

Ji, Baohong ;

Brennan, Patrick J. ;

Sow, Samba ;

Cole, Stewart T. .

MICROBES AND INFECTION, 2006, 8 (08) :2270-2276

[8] Search for potential vaccine candidate open reading frames in the Bacillus anthracis virulence plasmid pXO1:: In silico and in vitro screening [J].

Ariel, N ;

Zvi, A ;

Grosfeld, H ;

Gat, O ;

Inbar, Y ;

Velan, B ;

Cohen, S ;

Shafferman, A .

INFECTION AND IMMUNITY, 2002, 70 (12) :6817-6827

[9] Molecular characterization of Coxiella burnetii isolates by infrequent restriction site-PCR and MLVA typing [J].

Arricau-Bouvery, Nathalie ;

Hauck, Yolande ;

Bejaoui, Awatef ;

Frangoulidis, Dimitrios ;

Bodier, Christelle C. ;

Souriau, Armel ;

Meyer, Hermann ;

Neubauer, Heinrich ;

Rodolakis, Annie ;

Vergnaud, Gilles .

BMC MICROBIOLOGY, 2006, 6 (1)

[10] Genome and virulence determinants of high virulence community-acquired MRSA [J].

Baba, T ;

Takeuchi, F ;

Kuroda, M ;

Yuzawa, H ;

Aoki, K ;

Oguchi, A ;

Nagai, Y ;

Iwama, N ;

Asano, K ;

Naimi, T ;

Kuroda, H ;

Cui, L ;

Yamamoto, K ;

Hiramatsu, K .

LANCET, 2002, 359 (9320) :1819-1827

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