Pathway databases and higher order function

被引：9

作者：

Kanehisa, M ^{[1
]}

机构：

[1] Kyoto Univ, Inst Chem Res, Kyoto 6110011, Japan

来源：

ADVANCES IN PROTEIN CHEMISTRY, VOL 54: ANALYSIS OF AMINO ACID SEQUENCES | 2000年 / 54卷

关键词：

D O I：

10.1016/S0065-3233(00)54011-X

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

引用

页码：381 / 408

页数：28

共 30 条

[1] PROTEIN DATA BANK - COMPUTER-BASED ARCHIVAL FILE FOR MACROMOLECULAR STRUCTURES [J].

BERNSTEIN, FC ;

KOETZLE, TF ;

WILLIAMS, GJB ;

MEYER, EF ;

BRICE, MD ;

RODGERS, JR ;

KENNARD, O ;

SHIMANOUCHI, T ;

TASUMI, M .

JOURNAL OF MOLECULAR BIOLOGY, 1977, 112 (03) :535-542

[2] The complete genome sequence of Escherichia coli K-12 [J].

Blattner, FR ;

Plunkett, G ;

Bloch, CA ;

Perna, NT ;

Burland, V ;

Riley, M ;

ColladoVides, J ;

Glasner, JD ;

Rode, CK ;

Mayhew, GF ;

Gregor, J ;

Davis, NW ;

Kirkpatrick, HA ;

Goeden, MA ;

Rose, DJ ;

Mau, B ;

Shao, Y .

SCIENCE, 1997, 277 (5331) :1453-+

[3] Reconstruction of amino acid biosynthesis pathways from the complete genome sequence [J].

Bono, H ;

Ogata, H ;

Goto, S ;

Kanehisa, M .

GENOME RESEARCH, 1998, 8 (03) :203-210

[4] Conservation of gene order: a fingerprint of proteins that physically interact [J].

Dandekar, T ;

Snel, B ;

Huynen, M ;

Bork, P .

TRENDS IN BIOCHEMICAL SCIENCES, 1998, 23 (09) :324-328

[5] Cluster analysis and display of genome-wide expression patterns [J].

Eisen, MB ;

Spellman, PT ;

Brown, PO ;

Botstein, D .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (25) :14863-14868

[6] The University of Minnesota biocatalysis/biodegradation Database: specialized metabolism for functional genomics [J].

Ellis, LBM ;

Hershberger, CD ;

Wackett, LP .

NUCLEIC ACIDS RESEARCH, 1999, 27 (01) :373-376

[7] WHOLE-GENOME RANDOM SEQUENCING AND ASSEMBLY OF HAEMOPHILUS-INFLUENZAE RD [J].

FLEISCHMANN, RD ;

ADAMS, MD ;

WHITE, O ;

CLAYTON, RA ;

KIRKNESS, EF ;

KERLAVAGE, AR ;

BULT, CJ ;

TOMB, JF ;

DOUGHERTY, BA ;

MERRICK, JM ;

MCKENNEY, K ;

SUTTON, G ;

FITZHUGH, W ;

FIELDS, C ;

GOCAYNE, JD ;

SCOTT, J ;

SHIRLEY, R ;

LIU, LI ;

GLODEK, A ;

KELLEY, JM ;

WEIDMAN, JF ;

PHILLIPS, CA ;

SPRIGGS, T ;

HEDBLOM, E ;

COTTON, MD ;

UTTERBACK, TR ;

HANNA, MC ;

NGUYEN, DT ;

SAUDEK, DM ;

BRANDON, RC ;

FINE, LD ;

FRITCHMAN, JL ;

FUHRMANN, JL ;

GEOGHAGEN, NSM ;

GNEHM, CL ;

MCDONALD, LA ;

SMALL, KV ;

FRASER, CM ;

SMITH, HO ;

VENTER, JC .

SCIENCE, 1995, 269 (5223) :496-512

[8]

Fujibuchi W, 1998, Pac Symp Biocomput, P683

[9]

Goto S, 1996, PACIFIC SYMPOSIUM ON BIOCOMPUTING '97, P175

[10] LIGAND: chemical database for enzyme reactions [J].

Goto, S ;

Nishioka, T ;

Kanehisa, M .

BIOINFORMATICS, 1998, 14 (07) :591-599

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