Intra- and Interdomain Flexibility in Matrix Metalloproteinases: Functional Aspects and Drug Design

被引:21
作者
Bertini, Ivano [1 ,2 ]
Fragai, Marco [1 ,3 ]
Luchinat, Claudio [1 ,3 ]
机构
[1] Univ Florence, Magnet Resonance Ctr CERM, I-50019 Sesto Fiorentino, Italy
[2] Univ Florence, Dept Chem, I-50019 Sesto Fiorentino, Italy
[3] Univ Florence, Dept Agr Biotechnol, I-50144 Florence, Italy
关键词
Matrix metalloproteinases; NMR; SAXS; protein dynamics; protein flexibility; protease inhibitors; structure based drug design; HUMAN NEUTROPHIL COLLAGENASE; ZINC-BINDING GROUPS; X-RAY STRUCTURES; EXTRACELLULAR-MATRIX; CRYSTAL-STRUCTURE; CATALYTIC DOMAIN; SELECTIVE-INHIBITION; STRUCTURAL BASIS; IV COLLAGENASE; SUBSTRATE-SPECIFICITY;
D O I
10.2174/138161209789271852
中图分类号
R9 [药学];
学科分类号
100702 [药剂学];
摘要
Matrix metalloproteinases are involved in many biological processes and in a large set of diseases. In the last twenty years the genetics, functions, and the structural features of this family of proteolytic enzymes have been investigated and a large number of synthetic inhibitors designed and tested. A better knowledge of the dynamical features of these proteins can be relevant not only to reveal new biological activities but also to design more specific and selective inhibitors. Here, we report the common and the distinct structural features of these proteins, the most recent published information on protein dynamics in matrix metalloproteinases and the recent results on the catalytic mechanism. The implications of the observed intra- and interdomain flexibility in matrix metalloproteinases for drug design have been analyzed and discussed.
引用
收藏
页码:3592 / 3605
页数:14
相关论文
共 135 条
[1]
Zinc-binding groups modulate selective inhibition of MMPs [J].
Agrawal, Arpita ;
Romero-Perez, Diego ;
Jacobsen, Jennifer A. ;
Villarreal, Francisco J. ;
Cohen, Seth M. .
CHEMMEDCHEM, 2008, 3 (05) :812-820
[2]
BINDING OF GELATINASES A AND B TO TYPE-I COLLAGEN AND OTHER MATRIX COMPONENTS [J].
ALLAN, JA ;
DOCHERTY, AJP ;
BARKER, PJ ;
HUSKISSON, NS ;
REYNOLDS, JJ ;
MURPHY, G .
BIOCHEMICAL JOURNAL, 1995, 309 :299-306
[3]
Bioinformatic comparison of structures and homology-models of matrix metalloproteinases [J].
Andreini, C ;
Banci, L ;
Bertini, I ;
Luchinat, C ;
Rosato, A .
JOURNAL OF PROTEOME RESEARCH, 2004, 3 (01) :21-31
[4]
TIMP-1 contact sites and perturbations of stromelysin 1 mapped by NMR and a paramagnetic surface probe [J].
Arumugam, S ;
Hemme, CL ;
Yoshida, N ;
Suzuki, K ;
Nagase, H ;
Bejanskii, M ;
Wu, B ;
Van Doren, SR .
BIOCHEMISTRY, 1998, 37 (27) :9650-9657
[5]
Improved gelatinase A selectivity by novel zinc binding groups containing galardin derivatives [J].
Augé, F ;
Hornebeck, W ;
Decarme, M ;
Laronze, JY .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2003, 13 (10) :1783-1786
[6]
Structure and biological activity of the extracellular matrix [J].
Aumailley, M ;
Gayraud, B .
JOURNAL OF MOLECULAR MEDICINE-JMM, 1998, 76 (3-4) :253-265
[7]
Structural Bases for Substrate and Inhibitor Recognition by Matrix Metalloproteinases [J].
Aureli, Loretta ;
Gioia, Magda ;
Cerbara, Ilaria ;
Monaco, Susanna ;
Fasciglione, Giovanni Francesco ;
Marini, Stefano ;
Ascenzi, Paolo ;
Topai, Alessandra ;
Coletta, Massimo .
CURRENT MEDICINAL CHEMISTRY, 2008, 15 (22) :2192-2222
[8]
Collagenase-3 binds to a specific receptor and requires the low density lipoprotein receptor-related protein for internalization [J].
Barmina, OY ;
Walling, HW ;
Fiacco, GJ ;
Freije, JMP ;
López-Otín, C ;
Jeffrey, JJ ;
Partridge, NC .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1999, 274 (42) :30087-30093
[9]
Design, synthesis, and characterization of potent, slow-binding inhibitors that are selective for gelatinases [J].
Bernardo, MM ;
Brown, S ;
Li, ZH ;
Fridman, R ;
Mobashery, S .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (13) :11201-11207
[10]
Cell-matrix adhesion [J].
Berrier, Allison L. ;
Yamada, Kenneth M. .
JOURNAL OF CELLULAR PHYSIOLOGY, 2007, 213 (03) :565-573