ACT: the Artemis comparison tool

被引：1271

作者：

Carver, TJ

Rutherford, KM

Berriman, M

Rajandream, MA

Barrell, BG

Parkhill, J

机构：

[1] Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England

[2] Univ Cambridge, Dept Genet, Cambridge CB2 3EH, England

来源：

BIOINFORMATICS | 2005年 / 21卷 / 16期

关键词：

D O I：

10.1093/bioinformatics/bti553

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

The Artemis Comparison Tool (ACT) allows an interactive visualisation of comparisons between complete genome sequences and associated annotations. The comparison data can be generated with several different programs; BLASTN, TBLASTX or Mummer comparisons between genomic DNA sequences, or orthologue tables generated by reciprocal FASTA comparison between protein sets. It is possible to identify regions of similarity, insertions and rearrangements at any level from the whole genome to base-pair differences. ACT uses Artemis components to display the sequences and so inherits powerful searching and analysis tools. ACT is part of the Artemis distribution and is similarly open source, written in Java and can run on any Java enabled platform, including UNIX, Macintosh and Windows.

引用

页码：3422 / 3423

页数：2

共 6 条

[1]

Berriman Matt, 2003, Briefings in Bioinformatics, V4, P124, DOI 10.1093/bib/4.2.124

[2] Massive gene decay in the leprosy bacillus [J].

Cole, ST ;

Eiglmeier, K ;

Parkhill, J ;

James, KD ;

Thomson, NR ;

Wheeler, PR ;

Honoré, N ;

Garnier, T ;

Churcher, C ;

Harris, D ;

Mungall, K ;

Basham, D ;

Brown, D ;

Chillingworth, T ;

Connor, R ;

Davies, RM ;

Devlin, K ;

Duthoy, S ;

Feltwell, T ;

Fraser, A ;

Hamlin, N ;

Holroyd, S ;

Hornsby, T ;

Jagels, K ;

Lacroix, C ;

Maclean, J ;

Moule, S ;

Murphy, L ;

Oliver, K ;

Quail, MA ;

Rajandream, MA ;

Rutherford, KM ;

Rutter, S ;

Seeger, K ;

Simon, S ;

Simmonds, M ;

Skelton, J ;

Squares, R ;

Squares, S ;

Stevens, K ;

Taylor, K ;

Whitehead, S ;

Woodward, JR ;

Barrell, BG .

NATURE, 2001, 409 (6823) :1007-1011

[3] PREDICTION OF PROTEIN ANTIGENIC DETERMINANTS FROM AMINO-ACID-SEQUENCES [J].

HOPP, TP ;

WOODS, KR .

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1981, 78 (06) :3824-3828

[4] A SIMPLE METHOD FOR DISPLAYING THE HYDROPATHIC CHARACTER OF A PROTEIN [J].

KYTE, J ;

DOOLITTLE, RF .

JOURNAL OF MOLECULAR BIOLOGY, 1982, 157 (01) :105-132

[5] PREDICTING COILED COILS FROM PROTEIN SEQUENCES [J].

LUPAS, A ;

VANDYKE, M ;

STOCK, J .

SCIENCE, 1991, 252 (5009) :1162-1164

[6] Artemis: sequence visualization and annotation [J].

Rutherford, K ;

Parkhill, J ;

Crook, J ;

Horsnell, T ;

Rice, P ;

Rajandream, MA ;

Barrell, B .

BIOINFORMATICS, 2000, 16 (10) :944-945

← 1 →