Hydrogen bonding effects on the 15N and 1H shielding tensors in nucleic acid base pairs

被引:41
作者
Czernek, J [1 ]
Fiala, R [1 ]
Sklenár, V [1 ]
机构
[1] Masaryk Univ, Lab Biomol Struct & Dynam, CZ-61137 Brno, Czech Republic
关键词
NMR; chemical shielding tensor; ab initio calculations; purines; pyrimidines; TROSY; relaxation;
D O I
10.1006/jmre.2000.2091
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The results of systematic ab initio calculations of N-15 and H-1 chemical shielding tensors in the GC base pair as a function of hydrogen bond length are presented for the first time. The hydrogen bond length characterized by the distance r(N...N) between purine N1 and pyrimidine N3 was varied between 2.57 and 3.50 Angstrom and the chemical shift tensors were calculated by the sum-overstates density functional perturbation theory. It is shown that the hydrogen bond length has a strong effect on the chemical shielding tensor of both imino proton and nitrogen, on their orientation, and, as a consequence, on the relaxation properties of both nuclei. For a nitrogen nucleus not involved in hydrogen bonding, the shielding tensor is nearly axially symmetric and almost collinear with the bond vector. As the length of the hydrogen bond decreases, the least shielding component sigma(11) deflects from the N-H vector and the shielding tensor becomes increasingly asymmetric. The significance of the presented results for the analysis of relaxation data and the efficiency of TROSY effects together with a summary of the relevant shielding parameters are presented and discussed, (C) 2000 Academic Press.
引用
收藏
页码:142 / 146
页数:5
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