共 46 条
Reprogramming the genetic code: The emerging role of ribosomal frameshifting in regulating cellular gene expression
被引:45
作者:

Advani, Vivek M.
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机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Dinman, Jonathan D.
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h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA
机构:
[1] Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA
来源:
基金:
美国国家卫生研究院;
关键词:
cancer;
frameshifting;
miRNA;
NMD;
polyA track;
pseudoknot;
ribosome;
ribosomopathy;
SCA26;
telomere;
translation;
MESSENGER-RNA SURVEILLANCE;
TRANSLATIONAL FIDELITY;
STIMULATION;
PSEUDOURIDYLATION;
RPL10;
FRAME;
YEAST;
LEADS;
D O I:
10.1002/bies.201500131
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
070307 [化学生物学];
071010 [生物化学与分子生物学];
摘要:
Reading frame maintenance is a critical property of ribosomes. However, a number of genetic elements have been described that can induce ribosomes to shift on mRNAs, the most well understood of which are a class that directs ribosomal slippage by one base in 5' (-1) direction. This is referred to as programmed -1 ribosomal frame-shifting (-1 PRF). Recently, a new -1 PRF promoting element was serendipitously discovered in a study examining the effects of stretches of adenosines in the coding sequences of mRNAs. Here, we discuss this finding, recent studies describing how -1 PRF is used to control gene expression in eukaryotes, and how -1 PRF is itself regulated. The implications of dysregulation of -1 PRF on human health are examined, as are possible new areas in which novel -1 PRF promoting elements might be discovered.
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页码:21 / 26
页数:6
相关论文
共 46 条
[1]
Yeast telomere maintenance is globally controlled by programmed ribosomal frameshifting and the nonsense-mediated mRNA decay pathway
[J].
Advani, Vivek M.
;
Belew, Ashton T.
;
Dinman, Jonathan D.
.
TRANSLATION,
2013, 1 (01)

Advani, Vivek M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Belew, Ashton T.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Dinman, Jonathan D.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA
[2]
Translational control by lysine-encoding A-rich sequences
[J].
Arthur, Laura L.
;
Pavlovic-Djuranovic, Slavica
;
Koutmou, Kristin S.
;
Green, Rachel
;
Szczesny, Pawel
;
Djuranovic, Sergej
.
SCIENCE ADVANCES,
2015, 1 (06)

Arthur, Laura L.
论文数: 0 引用数: 0
h-index: 0
机构:
Washington Univ, Sch Med, Dept Cell Biol & Physiol, St Louis, MO 63110 USA Washington Univ, Sch Med, Dept Cell Biol & Physiol, St Louis, MO 63110 USA

Pavlovic-Djuranovic, Slavica
论文数: 0 引用数: 0
h-index: 0
机构:
Washington Univ, Sch Med, Dept Cell Biol & Physiol, St Louis, MO 63110 USA Washington Univ, Sch Med, Dept Cell Biol & Physiol, St Louis, MO 63110 USA

Koutmou, Kristin S.
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Sch Med, Dept Mol Biol & Genet, Baltimore, MD 21205 USA Washington Univ, Sch Med, Dept Cell Biol & Physiol, St Louis, MO 63110 USA

Green, Rachel
论文数: 0 引用数: 0
h-index: 0
机构:
Johns Hopkins Sch Med, Dept Mol Biol & Genet, Baltimore, MD 21205 USA
Howard Hughes Med Inst, Chevy Chase, MD USA Washington Univ, Sch Med, Dept Cell Biol & Physiol, St Louis, MO 63110 USA

论文数: 引用数:
h-index:
机构:

论文数: 引用数:
h-index:
机构:
[3]
A new system for naming ribosomal proteins
[J].
Ban, Nenad
;
Beckmann, Roland
;
Cate, Jamie H. D.
;
Dinman, Jonathan D.
;
Dragon, Francois
;
Ellis, Steven R.
;
Lafontaine, Denis L. J.
;
Lindahl, Lasse
;
Liljas, Anders
;
Lipton, Jeffrey M.
;
McAlear, Michael A.
;
Moore, Peter B.
;
Noller, Harry F.
;
Ortega, Joaquin
;
Panse, Vikram Govind
;
Ramakrishnan, V.
;
Spahn, Christian M. T.
;
Steitz, Thomas A.
;
Tchorzewski, Marek
;
Tollervey, David
;
Warren, Alan J.
;
Williamson, James R.
;
Wilson, Daniel
;
Yonath, Ada
;
Yusupov, Marat
.
CURRENT OPINION IN STRUCTURAL BIOLOGY,
2014, 24
:165-169

Ban, Nenad
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Beckmann, Roland
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Munich, Dept Biochem, Gene Ctr, D-81377 Munich, Germany
Univ Munich, Dept Biochem, Ctr Integrated Prot Sci Munich, D-81377 Munich, Germany ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Cate, Jamie H. D.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif Berkeley, Dept Chem, Berkeley, CA 94720 USA ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Dinman, Jonathan D.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Dragon, Francois
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Quebec, Dept Sci Biol, Montreal, PQ H3C 3P8, Canada
Univ Quebec, Ctr Rech BioMed, Montreal, PQ H3C 3P8, Canada ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Ellis, Steven R.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Louisville, Dept Biochem & Mol Biol, Louisville, KY 40202 USA ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Lafontaine, Denis L. J.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Libre Bruxelles, FRS FNRS, B-6041 Charleroi, Belgium ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

论文数: 引用数:
h-index:
机构:

Liljas, Anders
论文数: 0 引用数: 0
h-index: 0
机构:
Lund Univ, SE-793 Leksand, Sweden ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Lipton, Jeffrey M.
论文数: 0 引用数: 0
h-index: 0
机构:
Feinstein Inst Med Res, Manhasset, NY 11030 USA
500 Hofstra Univ, Hofstra Sch Med, Hempstead, NY 11549 USA ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

McAlear, Michael A.
论文数: 0 引用数: 0
h-index: 0
机构:
Wesleyan Univ, Dept Biochem & Mol Biol, Middletown, CT 06459 USA ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Moore, Peter B.
论文数: 0 引用数: 0
h-index: 0
机构:
Yale Univ, Dept Chem, New Haven, CT 06520 USA ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Noller, Harry F.
论文数: 0 引用数: 0
h-index: 0
机构:
UCSC, Dept MCD Biol, Santa Cruz, CA 94720 USA ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Ortega, Joaquin
论文数: 0 引用数: 0
h-index: 0
机构:
McMaster Univ, Dept Biochem & Biomed Sci, DeGroote Inst Infect Dis Res, Hamilton, ON L8S 4K1, Canada ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Panse, Vikram Govind
论文数: 0 引用数: 0
h-index: 0
机构:
ETH, Inst Biochem, CH-8093 Zurich, Switzerland ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Ramakrishnan, V.
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Mol Biol Lab, Cambridge CB2 0OH, England ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Spahn, Christian M. T.
论文数: 0 引用数: 0
h-index: 0
机构:
Charite, Inst Med Phys & Biophys, D-10117 Berlin, Germany ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Steitz, Thomas A.
论文数: 0 引用数: 0
h-index: 0
机构:
Yale Univ, Dept Biochem & Mol Biophys, New Haven, CT 06520 USA ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Tchorzewski, Marek
论文数: 0 引用数: 0
h-index: 0
机构:
Marie Curie Sklodowska Univ, Dept Mol Biol, PL-20033 Lublin, Poland ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

论文数: 引用数:
h-index:
机构:

Warren, Alan J.
论文数: 0 引用数: 0
h-index: 0
机构:
MRC, Mol Biol Lab, Cambridge CB2 0OH, England ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Williamson, James R.
论文数: 0 引用数: 0
h-index: 0
机构:
Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Wilson, Daniel
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Munich, Gene Ctr, D-81377 Munich, Germany ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Yonath, Ada
论文数: 0 引用数: 0
h-index: 0
机构:
Weizmann Inst Sci, Dept Biol Struct, IL-76100 Rehovot, Israel ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland

Yusupov, Marat
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Genet & Biol Mol & Cellulaire, F-67400 Illkirch Graffenstaden, France ETH, Inst Mol Biol & Biophys, CH-8093 Zurich, Switzerland
[4]
Augmented genetic decoding: global, local and temporal alterations of decoding processes and codon meaning
[J].
Baranov, Pavel V.
;
Atkins, John F.
;
Yordanova, Martina M.
.
NATURE REVIEWS GENETICS,
2015, 16 (09)
:517-529

Baranov, Pavel V.
论文数: 0 引用数: 0
h-index: 0
机构:
Natl Univ Ireland Univ Coll Cork, Sch Biochem & Cell Biol, Cork, Ireland Natl Univ Ireland Univ Coll Cork, Sch Biochem & Cell Biol, Cork, Ireland

Atkins, John F.
论文数: 0 引用数: 0
h-index: 0
机构:
Natl Univ Ireland Univ Coll Cork, Sch Biochem & Cell Biol, Cork, Ireland
Univ Utah, Dept Human Genet, Salt Lake City, UT 84112 USA Natl Univ Ireland Univ Coll Cork, Sch Biochem & Cell Biol, Cork, Ireland

Yordanova, Martina M.
论文数: 0 引用数: 0
h-index: 0
机构:
Natl Univ Ireland Univ Coll Cork, Sch Biochem & Cell Biol, Cork, Ireland Natl Univ Ireland Univ Coll Cork, Sch Biochem & Cell Biol, Cork, Ireland
[5]
PRFdb: A database of computationally predicted eukaryotic programmed-1 ribosomal frameshift signals
[J].
Belew, Ashton T.
;
Hepler, Nicholas L.
;
Jacobs, Jonathan L.
;
Dinman, Jonathan D.
.
BMC GENOMICS,
2008, 9 (1)
:339

Belew, Ashton T.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20854 USA Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20854 USA

Hepler, Nicholas L.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20854 USA Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20854 USA

Jacobs, Jonathan L.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20854 USA
NICHHD, Lab Mol Growth Regulat, NIH, Bethesda, MD 20892 USA Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20854 USA

Dinman, Jonathan D.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20854 USA Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20854 USA
[6]
Endogenous ribosomal frameshift signals operate as mRNA destabilizing elements through at least two molecular pathways in yeast
[J].
Belew, Ashton T.
;
Advani, Vivek M.
;
Dinman, Jonathan D.
.
NUCLEIC ACIDS RESEARCH,
2011, 39 (07)
:2799-2808

Belew, Ashton T.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20742 USA Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20742 USA

Advani, Vivek M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20742 USA Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20742 USA

Dinman, Jonathan D.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20742 USA Univ Maryland, Dept Mol Genet & Cell Biol, College Pk, MD 20742 USA
[7]
Ribosomal frameshifting in the CCR5 mRNA is regulated by miRNAs and the NMD pathway
[J].
Belew, Ashton Trey
;
Meskauskas, Arturas
;
Musalgaonkar, Sharmishtha
;
Advani, Vivek M.
;
Sulima, Sergey O.
;
Kasprzak, Wojciech K.
;
Shapiro, Bruce A.
;
Dinman, Jonathan D.
.
NATURE,
2014, 512 (7514)
:265-+

Belew, Ashton Trey
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Meskauskas, Arturas
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA
Vilnius State Univ, Dept Biotechnol & Microbiol, LT-03101 Vilnius, Lithuania Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Musalgaonkar, Sharmishtha
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Advani, Vivek M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Sulima, Sergey O.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Kasprzak, Wojciech K.
论文数: 0 引用数: 0
h-index: 0
机构:
Leidos Biomed Res Inc, Basic Sci Program, Frederick Natl Lab Canc Res, Frederick, MD 21702 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Shapiro, Bruce A.
论文数: 0 引用数: 0
h-index: 0
机构:
NCI, Basic Res Lab, Frederick, MD 21702 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA

Dinman, Jonathan D.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA Univ Maryland, Dept Cell Biol & Mol Genet, College Pk, MD 20742 USA
[8]
Programmed-1 Frameshifting by Kinetic Partitioning during Impeded Translocation
[J].
Caliskan, Neva
;
Katunin, Vladimir I.
;
Belardinelli, Riccardo
;
Peske, Frank
;
Rodnina, Marina V.
.
CELL,
2014, 157 (07)
:1619-1631

Caliskan, Neva
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany

Katunin, Vladimir I.
论文数: 0 引用数: 0
h-index: 0
机构:
BP Konstantinov Petersburg Nucl Phys Inst, Dept Mol & Radiat Biophys, Gatchina 188300, Russia Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany

Belardinelli, Riccardo
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany

Peske, Frank
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany

Rodnina, Marina V.
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany Max Planck Inst Biophys Chem, Dept Phys Biochem, D-37077 Gottingen, Germany
[9]
Pseudouridine profiling reveals regulated mRNA pseudouridylation in yeast and human cells
[J].
Carlile, Thomas M.
;
Rojas-Duran, Maria F.
;
Zinshteyn, Boris
;
Shin, Hakyung
;
Bartoli, Kristen M.
;
Gilbert, Wendy V.
.
NATURE,
2014, 515 (7525)
:143-+

Carlile, Thomas M.
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Dept Biol, Cambridge, MA 02139 USA MIT, Dept Biol, Cambridge, MA 02139 USA

Rojas-Duran, Maria F.
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Dept Biol, Cambridge, MA 02139 USA MIT, Dept Biol, Cambridge, MA 02139 USA

Zinshteyn, Boris
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Dept Biol, Cambridge, MA 02139 USA MIT, Dept Biol, Cambridge, MA 02139 USA

Shin, Hakyung
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Dept Biol, Cambridge, MA 02139 USA MIT, Dept Biol, Cambridge, MA 02139 USA

Bartoli, Kristen M.
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Dept Biol, Cambridge, MA 02139 USA MIT, Dept Biol, Cambridge, MA 02139 USA

Gilbert, Wendy V.
论文数: 0 引用数: 0
h-index: 0
机构:
MIT, Dept Biol, Cambridge, MA 02139 USA MIT, Dept Biol, Cambridge, MA 02139 USA
[10]
NMD: At the crossroads between translation termination and ribosome recycling
[J].
Celik, Alper
;
Kervestin, Stephanie
;
Jacobson, Allan
.
BIOCHIMIE,
2015, 114
:2-9

Celik, Alper
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Massachusetts, Sch Med, Dept Microbiol & Physiol Syst, Worcester, MA 01655 USA Univ Massachusetts, Sch Med, Dept Microbiol & Physiol Syst, Worcester, MA 01655 USA

Kervestin, Stephanie
论文数: 0 引用数: 0
h-index: 0
机构:
CNRS FRE3630 Associated Univ Diderot, Sorbonne Paris Cite, Inst Biol Phys Chim, F-75005 Paris, France Univ Massachusetts, Sch Med, Dept Microbiol & Physiol Syst, Worcester, MA 01655 USA

论文数: 引用数:
h-index:
机构:
