Structural basis of transcription: Role of the trigger loop in substrate specificity and catalysis

被引:369
作者
Wang, Dong [1 ]
Bushnell, David A. [1 ]
Westover, Kenneth D. [1 ]
Kaplan, Craig D. [1 ]
Kornberg, Roger D. [1 ]
机构
[1] Stanford Univ, Sch Med, Dept Biol Struct, Stanford, CA 94305 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1016/j.cell.2006.11.023
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
New structures of RNA polymerase II (pol II) transcribing complexes reveal a likely key to transcription. The trigger loop swings beneath a correct nucleoside triphosphate (NTP) in the nucleotide addition site, closing off the active center and forming an extensive network of interactions with the NTP base, sugar, phosphates, and additional pol II residues. A histidine side chain in the trigger loop, precisely positioned by these interactions, may literally "trigger" phosphodiester bond formation. Recognition and catalysis are thus coupled, ensuring the fidelity of transcription.
引用
收藏
页码:941 / 954
页数:14
相关论文
共 59 条
  • [1] ALBERT DA, 1985, J BIOL CHEM, V260, P679
  • [2] EXTENSIVE HOMOLOGY AMONG THE LARGEST SUBUNITS OF EUKARYOTIC AND PROKARYOTIC RNA-POLYMERASES
    ALLISON, LA
    MOYLE, M
    SHALES, M
    INGLES, CJ
    [J]. CELL, 1985, 42 (02) : 599 - 610
  • [3] Stimulation of transcription by mutations affecting conserved regions of RNA polymerase II
    Archambault, J
    Jansma, DB
    Kawasoe, JH
    Arndt, KT
    Greenblatt, J
    Friesen, JD
    [J]. JOURNAL OF BACTERIOLOGY, 1998, 180 (10) : 2590 - 2598
  • [4] Structural basis for transcription regulation by alarmone ppGpp
    Artsimovitch, I
    Patlan, V
    Sekine, SI
    Vassylyeva, MN
    Hosaka, T
    Ochi, K
    Yokoyama, S
    Vassylyev, DG
    [J]. CELL, 2004, 117 (03) : 299 - 310
  • [5] A ratchet mechanism of transcription elongation and its control
    Bar-Nahum, G
    Epshtein, V
    Ruckenstein, AE
    Rafikov, R
    Mustaev, A
    Nudler, E
    [J]. CELL, 2005, 120 (02) : 183 - 193
  • [6] Molecular mechanisms of the protein serine threonine phosphatases
    Barford, D
    [J]. TRENDS IN BIOCHEMICAL SCIENCES, 1996, 21 (11) : 407 - 412
  • [7] BORUKHOV S, 1991, J BIOL CHEM, V266, P23932
  • [8] Structural basis of transcription:: α-Amanitin-RNA polymerase II cocrystal at 2.8 A resolution
    Bushnell, DA
    Cramer, P
    Kornberg, RD
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2002, 99 (03) : 1218 - 1222
  • [9] DEOXYRIBONUCLEIC ACID-DIRECTED SYNTHESIS OF RIBONUCLEIC ACID BY AN ENZYME FROM ESCHERICHIA COLI
    CHAMBERLIN, M
    BERG, P
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1962, 48 (01) : 81 - &
  • [10] Structure and function of lineage-specific sequence insertions in the bacterial RNA polymerase β′ subunit
    Chlenov, M
    Masuda, S
    Murakami, KS
    Nikiforov, V
    Darst, SA
    Mustaev, A
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 2005, 353 (01) : 138 - 154