Disease-causing mutations in proteins: Structural analysis of the CYP1b1 mutations causing primary congenital glaucoma in humans

被引:47
作者
Achary, Malkaram S.
Reddy, Aramati B. M.
Chakrabarti, Subhabrata
Panicker, Shirly G.
Mandal, Anil K.
Ahmed, Niyaz
Balasubramanian, Dorairajan
Hasnain, Seyed E.
Nagarajaram, Hampapathalu A. [1 ]
机构
[1] Ctr DNA Fingerprinting & Diagnost, Hyderabad 500076, Andhra Pradesh, India
[2] LV Prasad Eye Inst, Prof Brien Holden Eye Res Ctr, Hyderabad 500034, Andhra Pradesh, India
[3] Jawaharlal Nehru Ctr Adv Sci Res, Bangalore 560064, Karnataka, India
[4] Univ Hyderabad, Hyderabad 500046, Andhra Pradesh, India
关键词
D O I
10.1529/biophysj.106.085498
中图分类号
Q6 [生物物理学];
学科分类号
071011 [生物物理学];
摘要
In this communication, we report an in-depth structure-based analysis of the human CYP1b1 protein carrying disease-causing mutations that are discovered in patients suffering from primary congenital glaucoma (PCG). The "wild-type'' and the PCG mutant structures of the human CYP1b1 protein obtained from comparative modeling were subjected to long molecular dynamics simulations with an intention of studying the possible impact of these mutations on the protein structure and hence its function. Analysis of time evolution as well as time averaged values of various structural properties - especially of those of the functionally important regions: the heme binding region, substrate binding region, and substrate access channel - gave some insights into the possible structural characteristics of the disease mutant and the wild-type forms of the protein. In a nutshell, compared to the wild-type the core regions in the mutant structures are associated with subtle but significant changes, and the functionally important regions seem to adopt such structures that are not conducive for the wild-type-like functionality.
引用
收藏
页码:4329 / 4339
页数:11
相关论文
共 52 条
[1]
A second locus (GLC3B) for primary congenital glaucoma (Buphthalmos) maps to the 1p36 region [J].
Akarsu, AN ;
Turacli, ME ;
Aktan, SG ;
BarsoumHomsy, M ;
Chevrette, L ;
Sayli, BS ;
Sarfarazi, M .
HUMAN MOLECULAR GENETICS, 1996, 5 (08) :1199-1203
[2]
Mutations in CYP1B1, the gene for cytochrome P4501B1, are the predominant cause of primary congenital glaucoma in Saudi Arabia [J].
Bejjani, BA ;
Lewis, RA ;
Tomey, KF ;
Anderson, KL ;
Dueker, DK ;
Jabak, M ;
Astle, WF ;
Otterud, B ;
Leppert, M ;
Lupski, JR .
AMERICAN JOURNAL OF HUMAN GENETICS, 1998, 62 (02) :325-333
[3]
Multiple CYP1B1 mutations and incomplete penetrance in an inbred population segregating primary congenital glaucoma suggest frequent de novo events and a dominant modifier locus [J].
Bejjani, BA ;
Stockton, DW ;
Lewis, RA ;
Tomey, KF ;
Dueker, DK ;
Jabak, M ;
Astle, WF ;
Lupski, JR .
HUMAN MOLECULAR GENETICS, 2000, 9 (03) :367-374
[4]
PARTICLE MESH EWALD - AN N.LOG(N) METHOD FOR EWALD SUMS IN LARGE SYSTEMS [J].
DARDEN, T ;
YORK, D ;
PEDERSEN, L .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (12) :10089-10092
[5]
PRIMARY INFANTILE GLAUCOMA (CONGENITAL GLAUCOMA) [J].
DELUISE, VP ;
ANDERSON, DR .
SURVEY OF OPHTHALMOLOGY, 1983, 28 (01) :1-19
[6]
POPULATION GENETIC-ASPECTS OF PRIMARY CONGENITAL GLAUCOMA .1. INCIDENCE, PREVALENCE, GENE-FREQUENCY, AND AGE OF ONSET [J].
GENCIK, A ;
GENCIKOVA, A ;
FERAK, V .
HUMAN GENETICS, 1982, 61 (03) :193-197
[7]
SWISS-MODEL and the Swiss-PdbViewer: An environment for comparative protein modeling [J].
Guex, N ;
Peitsch, MC .
ELECTROPHORESIS, 1997, 18 (15) :2714-2723
[8]
Hess B, 1997, J COMPUT CHEM, V18, P1463, DOI 10.1002/(SICI)1096-987X(199709)18:12<1463::AID-JCC4>3.0.CO
[9]
2-H
[10]
GST, NAT, SULT1A1, CYP1B1 genetic polymorphisms, interactions with environmental exposures and bladder cancer risk in a high-risk population [J].
Hung, RJ ;
Boffetta, P ;
Brennan, P ;
Malaveille, C ;
Hautefeuille, A ;
Donato, F ;
Gelatti, U ;
Spaliviero, M ;
Placidi, D ;
Carta, A ;
di Carlo, AS ;
Porru, S .
INTERNATIONAL JOURNAL OF CANCER, 2004, 110 (04) :598-604