共 25 条
Linking stochastic dynamics to population distribution: An analytical framework of gene expression
被引:490
作者:

Friedman, Nir
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机构:
Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Cai, Long
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机构:
Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Xie, X. Sunney
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机构:
Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA
机构:
[1] Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA
关键词:
D O I:
10.1103/PhysRevLett.97.168302
中图分类号:
O4 [物理学];
学科分类号:
0702 ;
摘要:
We present an analytical framework describing the steady-state distribution of protein concentration in live cells, considering that protein production occurs in random bursts with an exponentially distributed number of molecules. We extend this framework for cases of transcription autoregulation and noise propagation in a simple genetic network. This model allows for the extraction of kinetic parameters of gene expression from steady-state distributions of protein concentration in a cell population, which are available from single cell data obtained by flow cytometry or fluorescence microscopy.
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共 25 条
[1]
Noise in protein expression scales with natural protein abundance
[J].
Bar-Even, Arren
;
Paulsson, Johan
;
Maheshri, Narendra
;
Carmi, Miri
;
O'Shea, Erin
;
Pilpel, Yitzhak
;
Barkai, Naama
.
NATURE GENETICS,
2006, 38 (06)
:636-643

Bar-Even, Arren
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Syst Biol, Boston, MA 02115 USA

Paulsson, Johan
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Syst Biol, Boston, MA 02115 USA

Maheshri, Narendra
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Syst Biol, Boston, MA 02115 USA

Carmi, Miri
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Syst Biol, Boston, MA 02115 USA

O'Shea, Erin
论文数: 0 引用数: 0
h-index: 0
机构: Harvard Univ, Dept Syst Biol, Boston, MA 02115 USA

论文数: 引用数:
h-index:
机构:

论文数: 引用数:
h-index:
机构:
[2]
Engineering stability in gene networks by autoregulation
[J].
Becskei, A
;
Serrano, L
.
NATURE,
2000, 405 (6786)
:590-593

Becskei, A
论文数: 0 引用数: 0
h-index: 0
机构:
European Mol Biol Lab, D-69012 Heidelberg, Germany European Mol Biol Lab, D-69012 Heidelberg, Germany

Serrano, L
论文数: 0 引用数: 0
h-index: 0
机构:
European Mol Biol Lab, D-69012 Heidelberg, Germany European Mol Biol Lab, D-69012 Heidelberg, Germany
[3]
MODEL FOR STATISTICAL FLUCTUATIONS OF PROTEIN NUMBERS IN A MICROBIAL-POPULATION
[J].
BERG, OG
.
JOURNAL OF THEORETICAL BIOLOGY,
1978, 71 (04)
:587-603

BERG, OG
论文数: 0 引用数: 0
h-index: 0
[4]
Noise in eukaryotic gene expression
[J].
Blake, WJ
;
Kærn, M
;
Cantor, CR
;
Collins, JJ
.
NATURE,
2003, 422 (6932)
:633-637

Blake, WJ
论文数: 0 引用数: 0
h-index: 0
机构: Boston Univ, Ctr Biodynam, Boston, MA 02215 USA

Kærn, M
论文数: 0 引用数: 0
h-index: 0
机构: Boston Univ, Ctr Biodynam, Boston, MA 02215 USA

Cantor, CR
论文数: 0 引用数: 0
h-index: 0
机构: Boston Univ, Ctr Biodynam, Boston, MA 02215 USA

Collins, JJ
论文数: 0 引用数: 0
h-index: 0
机构: Boston Univ, Ctr Biodynam, Boston, MA 02215 USA
[5]
Stochastic protein expression in individual cells at the single molecule level
[J].
Cai, L
;
Friedman, N
;
Xie, XS
.
NATURE,
2006, 440 (7082)
:358-362

Cai, L
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Friedman, N
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA

Xie, XS
论文数: 0 引用数: 0
h-index: 0
机构:
Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA Harvard Univ, Dept Chem & Biol Chem, Cambridge, MA 02138 USA
[6]
Stochastic gene expression in a single cell
[J].
Elowitz, MB
;
Levine, AJ
;
Siggia, ED
;
Swain, PS
.
SCIENCE,
2002, 297 (5584)
:1183-1186

Elowitz, MB
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Canc Biol Lab, New York, NY 10021 USA

Levine, AJ
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Canc Biol Lab, New York, NY 10021 USA

Siggia, ED
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Canc Biol Lab, New York, NY 10021 USA

Swain, PS
论文数: 0 引用数: 0
h-index: 0
机构: Rockefeller Univ, Canc Biol Lab, New York, NY 10021 USA
[7]
Global analysis of protein expression in yeast
[J].
Ghaemmaghami, S
;
Huh, W
;
Bower, K
;
Howson, RW
;
Belle, A
;
Dephoure, N
;
O'Shea, EK
;
Weissman, JS
.
NATURE,
2003, 425 (6959)
:737-741

Ghaemmaghami, S
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94143 USA

Huh, W
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94143 USA

Bower, K
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94143 USA

Howson, RW
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94143 USA

Belle, A
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94143 USA

Dephoure, N
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94143 USA

O'Shea, EK
论文数: 0 引用数: 0
h-index: 0
机构: Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94143 USA

Weissman, JS
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94143 USA Univ Calif San Francisco, Howard Hughes Med Inst, San Francisco, CA 94143 USA
[8]
EXACT STOCHASTIC SIMULATION OF COUPLED CHEMICAL-REACTIONS
[J].
GILLESPIE, DT
.
JOURNAL OF PHYSICAL CHEMISTRY,
1977, 81 (25)
:2340-2361

GILLESPIE, DT
论文数: 0 引用数: 0
h-index: 0
[9]
Real-time kinetics of gene activity in individual bacteria
[J].
Golding, I
;
Paulsson, J
;
Zawilski, SM
;
Cox, EC
.
CELL,
2005, 123 (06)
:1025-1036

Golding, I
论文数: 0 引用数: 0
h-index: 0
机构:
Princeton Univ, Dept Biol Mol, Princeton, NJ 08544 USA Princeton Univ, Dept Biol Mol, Princeton, NJ 08544 USA

Paulsson, J
论文数: 0 引用数: 0
h-index: 0
机构: Princeton Univ, Dept Biol Mol, Princeton, NJ 08544 USA

Zawilski, SM
论文数: 0 引用数: 0
h-index: 0
机构: Princeton Univ, Dept Biol Mol, Princeton, NJ 08544 USA

Cox, EC
论文数: 0 引用数: 0
h-index: 0
机构: Princeton Univ, Dept Biol Mol, Princeton, NJ 08544 USA
[10]
Prediction and measurement of an autoregulatory genetic module
[J].
Isaacs, FJ
;
Hasty, J
;
Cantor, CR
;
Collins, JJ
.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA,
2003, 100 (13)
:7714-7719

Isaacs, FJ
论文数: 0 引用数: 0
h-index: 0
机构: Boston Univ, Dept Biomed Engn, Boston, MA 02215 USA

Hasty, J
论文数: 0 引用数: 0
h-index: 0
机构: Boston Univ, Dept Biomed Engn, Boston, MA 02215 USA

Cantor, CR
论文数: 0 引用数: 0
h-index: 0
机构: Boston Univ, Dept Biomed Engn, Boston, MA 02215 USA

Collins, JJ
论文数: 0 引用数: 0
h-index: 0
机构: Boston Univ, Dept Biomed Engn, Boston, MA 02215 USA