Structural consequences of the replacement of glycine M203 with aspartic acid in the reaction center from Rhodobacter sphaeroides

被引:32
作者
Fyfe, PK
Ridge, JP
McAuley, KE
Cogdell, RJ
Isaacs, NW
Jones, MR
机构
[1] Univ Sheffield, Krebs Inst Biomolec Res, Dept Mol Biol & Biotechnol, Sheffield S10 2UH, S Yorkshire, England
[2] Univ Sheffield, Robert Hill Inst Photosynth, Dept Mol Biol & Biotechnol, Sheffield S10 2UH, S Yorkshire, England
[3] Univ Glasgow, Dept Chem, Glasgow G12 8QQ, Lanark, Scotland
[4] Univ Glasgow, Div Biochem & Mol Biol, Glasgow G12 8QQ, Lanark, Scotland
关键词
D O I
10.1021/bi9925017
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Reaction centers with the double mutation Phe M197 to Arg and Gly M203 to Asp (FM197R/ GM203D) have been crystallized from an antenna-deficient strain of Rhodobacter sphaeroides, and the structure has been determined at 2.7 Angstrom resolution. Unlike in reaction centers with a single FM197R mutation, the Arg M197 residue in the FM197R/GM203D reaction center adopts a position similar to that of the native Phe residue in the wild-type reaction center. Asp M203 is packed in such a way that the gamma-carboxy group interacts with the backbone carbonyl of Arg M197. The Asp M203 residue takes up part of the volume that is occupied in the wild-type reaction center by a water molecule. This water has been proposed to form a hydrogen bond interaction with the 9-keto carbonyl group of the active branch accessory bacteriochlorophyll, particularly when the primary donor bacteriochlorophylls are oxidized. The GM203D mutation therefore appears to remove the possibility of this hydrogen bond interaction by exclusion of this water molecule, as well as altering the local dielectric environment of the 9-keto carbonyl group. We examine whether the observed structural changes can provide new or alternative explanations for the absorbance and electron-transfer properties of reaction centers with the FM197R and GM203D mutations.
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页码:5953 / 5960
页数:8
相关论文
共 42 条
[1]   RELATIONSHIP BETWEEN THE OXIDATION POTENTIAL OF THE BACTERIOCHLOROPHYLL DIMER AND ELECTRON-TRANSFER IN PHOTOSYNTHETIC REACTION CENTERS [J].
ALLEN, JP ;
WILLIAMS, JC .
JOURNAL OF BIOENERGETICS AND BIOMEMBRANES, 1995, 27 (03) :275-283
[2]   STRUCTURE OF THE REACTION CENTER FROM RHODOBACTER-SPHAEROIDES R-26 - THE COFACTORS .1. [J].
ALLEN, JP ;
FEHER, G ;
YEATES, TO ;
KOMIYA, H ;
REES, DC .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1987, 84 (16) :5730-5734
[3]   STRUCTURAL HOMOLOGY OF REACTION CENTERS FROM RHODOPSEUDOMONAS-SPHAEROIDES AND RHODOPSEUDOMONAS-VIRIDIS AS DETERMINED BY X-RAY-DIFFRACTION [J].
ALLEN, JP ;
FEHER, G ;
YEATES, TO ;
REES, DC ;
DEISENHOFER, J ;
MICHEL, H ;
HUBER, R .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1986, 83 (22) :8589-8593
[4]   Strong acceleration of primary photosynthetic electron transfer in a mutated reaction center of Rhodopseudomonas viridis [J].
Arlt, T ;
Bibikova, M ;
Penzkofer, H ;
Oesterhelt, D ;
Zinth, W .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (29) :12060-12065
[5]   THE ACCESSORY BACTERIOCHLOROPHYLL - A REAL ELECTRON CARRIER IN PRIMARY PHOTOSYNTHESIS [J].
ARLT, T ;
SCHMIDT, S ;
KAISER, W ;
LAUTERWASSER, C ;
MEYER, M ;
SCHEER, H ;
ZINTH, W .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (24) :11757-11761
[6]   FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].
BRUNGER, AT .
NATURE, 1992, 355 (6359) :472-475
[7]   CRYSTALLOGRAPHIC R-FACTOR REFINEMENT BY MOLECULAR-DYNAMICS [J].
BRUNGER, AT ;
KURIYAN, J ;
KARPLUS, M .
SCIENCE, 1987, 235 (4787) :458-460
[8]   STRUCTURE OF THE MEMBRANE-BOUND PROTEIN PHOTOSYNTHETIC REACTION CENTER FROM RHODOBACTER-SPHAEROIDES [J].
CHANG, CH ;
ELKABBANI, O ;
TIEDE, D ;
NORRIS, J ;
SCHIFFER, M .
BIOCHEMISTRY, 1991, 30 (22) :5352-5360
[9]   STRUCTURE OF RHODOPSEUDOMONAS-SPHAEROIDES R-26 REACTION CENTER [J].
CHANG, CH ;
TIEDE, D ;
TANG, J ;
SMITH, U ;
NORRIS, J ;
SCHIFFER, M .
FEBS LETTERS, 1986, 205 (01) :82-86
[10]   Remarks about protein structure precision [J].
Cruickshank, DWJ .
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 1999, 55 :583-601