The crystal structure of subtilisin Carlsberg in anhydrous dioxane and its comparison with those in water and acetonitrile

被引:70
作者
Schmitke, JL [1 ]
Stern, LJ [1 ]
Klibanov, AM [1 ]
机构
[1] MIT, DEPT CHEM, CAMBRIDGE, MA 02139 USA
关键词
D O I
10.1073/pnas.94.9.4250
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The x-ray crystal structure of the serine protease subtilisin Carlsberg in anhydrous dioxane has been determined to 2.6-Angstrom resolution. The enzyme structure is found to be nearly indistinguishable from the structures previously determined in water and acetonitrile. Small changes in the side-chain conformations between the dioxane and water structures are of the same magnitude as those observed between two structures in different aqueous systems. Seven enzyme-bound dioxane molecules have been detected, each potentially forming at Beast one hydrogen bond with a subtilisin hydrogen-bond donor or bound water, Two of the bound dioxane molecules are in the active-site region, one in the P2 and another bridging the P1' and P3' pockets. The other five dioxane molecules are located on the surface of subtilisin at interprotein crystal contacts. The locations of the bound solvent in the dioxane structure are distinct from those in the structures in acetonitrile and in water.
引用
收藏
页码:4250 / 4255
页数:6
相关论文
共 27 条
[1]   An experimental approach to mapping the binding surfaces of crystalline proteins [J].
Allen, KN ;
Bellamacina, CR ;
Ding, XC ;
Jeffery, CJ ;
Mattos, C ;
Petsko, GA ;
Ringe, D .
JOURNAL OF PHYSICAL CHEMISTRY, 1996, 100 (07) :2605-2611
[2]  
[Anonymous], ACTA CRYSTALLOGR D
[3]   THE HIGH-RESOLUTION X-RAY CRYSTAL-STRUCTURE OF THE COMPLEX FORMED BETWEEN SUBTILISIN CARLSBERG AND EGLIN-C, AN ELASTASE INHIBITOR FROM THE LEECH HIRUDO-MEDICINALIS - STRUCTURAL-ANALYSIS, SUBTILISIN STRUCTURE AND INTERFACE GEOMETRY .2. [J].
BODE, W ;
PAPAMOKOS, E ;
MUSIL, D .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1987, 166 (03) :673-692
[4]   FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].
BRUNGER, AT .
NATURE, 1992, 355 (6359) :472-475
[5]   CRYSTALLOGRAPHIC R-FACTOR REFINEMENT BY MOLECULAR-DYNAMICS [J].
BRUNGER, AT ;
KURIYAN, J ;
KARPLUS, M .
SCIENCE, 1987, 235 (4787) :458-460
[6]   X-RAY STRUCTURE-ANALYSIS OF 1,4-DIOXANE, PHASE-I AT 279-K AND PHASE-II AT 153-K [J].
BUSCHMANN, J ;
MULLER, E ;
LUGER, P .
ACTA CRYSTALLOGRAPHICA SECTION C-CRYSTAL STRUCTURE COMMUNICATIONS, 1986, 42 :873-876
[7]   SOLVENT-ACCESSIBLE SURFACES OF PROTEINS AND NUCLEIC-ACIDS [J].
CONNOLLY, ML .
SCIENCE, 1983, 221 (4612) :709-713
[8]  
ENGE RA, 1991, ACTA CRYSTALLOGR A, V47, P392
[9]   X-RAY CRYSTAL-STRUCTURE OF CROSS-LINKED SUBTILISIN CARLSBERG IN WATER VS ACETONITRILE [J].
FITZPATRICK, PA ;
RINGE, D ;
KLIBANOV, AM .
BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, 1994, 198 (02) :675-681
[10]   ENZYME CRYSTAL-STRUCTURE IN A NEAT ORGANIC-SOLVENT [J].
FITZPATRICK, PA ;
STEINMETZ, ACU ;
RINGE, D ;
KLIBANOV, AM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (18) :8653-8657