A set of HNCO-based experiments for measurement of residual dipolar couplings in 15N, 13C, (2H)-labeled proteins

被引:79
作者
Permi, P
Rosevear, PR
Annila, A
机构
[1] Univ Helsinki, Inst Biotechnol, FIN-00014 Helsinki, Finland
[2] Univ Cincinnati, Coll Med, Dept Mol Genet Biochem & Microbiol, Cincinnati, OH 45267 USA
[3] VTT Biotechnol, FIN-02044 Espoo, Finland
关键词
calerythrin; cardiac troponin C; HNCO; residual dipolar couplings; spin-state selective filters; TROSY; ubiquitin;
D O I
10.1023/A:1008372624615
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Several HNCO-based three-dimensional experiments are described for the measurement of C-13'(i-1)-C-13(alpha)(i-1), N-15(i)-C-13'(i-1), N-15(i)-C-13(alpha)(i), N-15(i)-C-13(alpha)(i-1), H-1(N)(i)-C-13(alpha)(i), H-1(N)(i)-C-13(alpha)(i-1), and C-13(alpha)(i-1)-C-13(beta)(i-1) scalar and dipolar couplings in N-15, C-13, (H-2)-labelled protein samples. These pulse sequences produce spin-state edited spectra superficially resembling an HNCO correlation spectrum, allowing accurate and simple measurement of couplings without introducing additional spectral crowding. Scalar and dipolar couplings are measured with good sensitivity from relatively large proteins, as demonstrated with three proteins: cardiac Troponin C, calerythrin and ubiquitin. Measurement of several dipolar couplings between spin-1/2 nuclei using spin-state selective 3D HNCO spectra provides a wealth of structural information.
引用
收藏
页码:43 / 54
页数:12
相关论文
共 44 条
[1]   Spin-state selection filters for the measurement of heteronuclear one-bond coupling constants [J].
Andersson, P ;
Weigelt, J ;
Otting, G .
JOURNAL OF BIOMOLECULAR NMR, 1998, 12 (03) :435-441
[2]   An α/β-HSQC-α/β experiment for spin-state selective editing of IS cross peaks [J].
Andersson, P ;
Annila, A ;
Otting, G .
JOURNAL OF MAGNETIC RESONANCE, 1998, 133 (02) :364-367
[3]   Recognition of protein folds via dipolar couplings [J].
Annila, A ;
Aitio, H ;
Thulin, E ;
Drakenberg, T .
JOURNAL OF BIOMOLECULAR NMR, 1999, 14 (03) :223-230
[4]   High-resolution heteronuclear NMR of human ubiquitin in an aqueous liquid crystalline medium [J].
Bax, A ;
Tjandra, N .
JOURNAL OF BIOMOLECULAR NMR, 1997, 10 (03) :289-292
[5]   Solution structure of cyanovirin-N, a potent HIV-inactivating protein [J].
Bewley, CA ;
Gustafson, KR ;
Boyd, MR ;
Covell, DG ;
Bax, A ;
Clore, GM ;
Gronenborn, AM .
NATURE STRUCTURAL BIOLOGY, 1998, 5 (07) :571-578
[6]   THE ACCORDION EXPERIMENT, A SIMPLE APPROACH TO 3-DIMENSIONAL NMR-SPECTROSCOPY [J].
BODENHAUSEN, G ;
ERNST, RR .
JOURNAL OF MAGNETIC RESONANCE, 1981, 45 (02) :367-373
[7]   Accurate measurement of HN-Hα residual dipolar couplings in proteins [J].
Cai, ML ;
Wang, H ;
Olejniczak, ET ;
Meadows, RP ;
Gunasekera, AH ;
Xu, N ;
Fesik, SW .
JOURNAL OF MAGNETIC RESONANCE, 1999, 139 (02) :451-453
[8]   A robust method for determining the magnitude of the fully asymmetric alignment tensor of oriented macromolecules in the absence of structural information [J].
Clore, GM ;
Gronenborn, AM ;
Bax, A .
JOURNAL OF MAGNETIC RESONANCE, 1998, 133 (01) :216-221
[9]   Direct structure refinement against residual dipolar couplings in the presence of rhombicity of unknown magnitude [J].
Clore, GM ;
Gronenborn, AM ;
Tjandra, N .
JOURNAL OF MAGNETIC RESONANCE, 1998, 131 (01) :159-162
[10]   Validation of protein structure from anisotropic carbonyl chemical shifts in a dilute liquid crystalline phase [J].
Cornilescu, G ;
Marquardt, JL ;
Ottiger, M ;
Bax, A .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1998, 120 (27) :6836-6837