The tail of the ParG DNA segregation protein remodels ParF polymers and enhances ATP hydrolysis via an arginine finger-like motif

被引:69
作者
Barilla, Daniela
Carmelo, Emma
Hayes, Finbarr
机构
[1] Univ York, Dept Biol, Area 10, York YO10 5YW, N Yorkshire, England
[2] Univ Manchester, Fac Life Sci, Manchester M1 7DN, Lancs, England
[3] Univ Manchester, Manchester Interdisciplinary Bioctr, Manchester M1 7DN, Lancs, England
基金
英国惠康基金; 英国生物技术与生命科学研究理事会; 英国医学研究理事会;
关键词
ParA superfamily; polymerization; plasmid partition; ATPase;
D O I
10.1073/pnas.0607216104
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
The ParF protein of plasmid TP228 belongs to the ubiquitous superfamily of ParA ATPases that drive DNA segregation in bacteria. ATF-bound ParF polymerizes into multistranded filaments. The partner protein ParG is dimeric, consisting of C-termini that interweave into a ribbon-helix-helix domain contacting the centromeric DNA and unstructured N-termini. ParG stimulates ATP hydrolysis by ParF approximate to 30-fold. Here, we establish that the mobile tails of ParG are crucial for this enhancement and that arginine R19 within the tail is absolutely required for activation of ParF nucleoticle hydrolysis. R19 is part of an arginine finger-like loop in ParG that is predicted to intercalate into the ParF nucleotide-binding pocket thereby promoting ATP hydrolysis. Significantly, mutations of R19 abrogated DNA segregation in vivo, proving that intracellular stimulation of ATP hydrolysis by ParG is a key regulatory process for partitioning. Furthermore, ParG bundles ParF-ATP filaments as well as promoting nucleotide-independent polymerization. The N-terminal flexible tail is required for both activities, because N-terminal Delta ParG polypepticles are defective in both functions. Strikingly, the critical arginine finger-like residue R19 is dispensable for ParG-mediated remodeling of ParF polymers, revealing that the ParG N-terminal tail possesses two separable activities in the interplay with ParF: a catalytic function during ATP hydrolysis and a mechanical role in modulation of polymerization. We speculate that activation of nucleoticle hydrolysis via an arginine finger loop may be a conserved, regulatory mechanism of ParA family members and their partner proteins, including ParAParB and Soj-SpoOJ that mediate DNA segregation and MinD-MinE that determine septum localization.
引用
收藏
页码:1811 / 1816
页数:6
相关论文
共 36 条
[1]   Confirmation of the arginine-finger hypothesis for the GAP-stimulated GTP-hydrolysis reaction of Ras [J].
Ahmadian, MR ;
Stege, P ;
Scheffzek, K ;
Wittinghofer, A .
NATURE STRUCTURAL BIOLOGY, 1997, 4 (09) :686-689
[2]   Bacterial DNA segregation dynamics mediated by the polymerizing protein ParF [J].
Barillá, D ;
Rosenberg, MF ;
Nobbmann, U ;
Hayes, F .
EMBO JOURNAL, 2005, 24 (07) :1453-1464
[3]   Architecture of the ParF•ParG protein complex involved in prokaryotic DNA segregation [J].
Barillà, D ;
Hayes, F .
MOLECULAR MICROBIOLOGY, 2003, 49 (02) :487-499
[4]   P1 ParA interacts with the P1 partition complex at parS and an ATP-ADP switch controls ParA activities [J].
Bouet, JY ;
Funnell, BE .
EMBO JOURNAL, 1999, 18 (05) :1415-1424
[5]   The unstructured N-terminal tail of ParG modulates assembly of a quaternary nucleoprotein complex in transcription repression [J].
Carmelo, E ;
Barillà, D ;
Golovanov, AP ;
Lian, LY ;
Derome, A ;
Hayes, F .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (31) :28683-28691
[6]   The P1 ParA protein and its ATPase activity play a direct role in the segregation of plasmid copies to daughter cells [J].
Davis, MA ;
Radnedge, L ;
Martin, KA ;
Hayes, F ;
Youngren, B ;
Austin, SJ .
MOLECULAR MICROBIOLOGY, 1996, 21 (05) :1029-1036
[7]   ParB-stimulated nucleotide exchange regulates a switch in functionally distinct ParA activities [J].
Easter, J ;
Gober, JW .
MOLECULAR CELL, 2002, 10 (02) :427-434
[8]   Plasmid segregation mechanisms [J].
Ebersbach, G ;
Gerdes, K .
ANNUAL REVIEW OF GENETICS, 2005, 39 :453-479
[9]   Heterodimeric GTPase core of the SRP targeting complex [J].
Focia, PJ ;
Shepotinovskaya, IV ;
Seidler, JA ;
Freymann, DM .
SCIENCE, 2004, 303 (5656) :373-377
[10]   Protein diversity confers specificity in plasmid segregation [J].
Fothergill, TJG ;
Barillà, D ;
Hayes, F .
JOURNAL OF BACTERIOLOGY, 2005, 187 (08) :2651-2661