GENOTRACE: cDNA-based local GENOme assembly from TRACE archives

被引:12
作者
Berezikov, E [1 ]
Plasterk, RHA [1 ]
Cuppen, E [1 ]
机构
[1] Netherlands Inst Dev Biol, Hubrecht Lab, NL-3584 CT Utrecht, Netherlands
关键词
D O I
10.1093/bioinformatics/18.10.1396
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
GENOTRACE identifies the genomic organization for a cDNA using raw data from genome sequencing projects in progress (trace archives). Local genomic contigs are generated, allowing for example the design of PCR primers in intronic sequences to amplify coding regions of a gene, needed for example for mutation or SNP detection.
引用
收藏
页码:1396 / 1397
页数:2
相关论文
共 3 条
[1]   Automated finishing with Autofinish [J].
Gordon, D ;
Desmarais, C ;
Green, P .
GENOME RESEARCH, 2001, 11 (04) :614-625
[2]   SSAHA: A fast search method for large DNA databases [J].
Ning, ZM ;
Cox, AJ ;
Mullikin, JC .
GENOME RESEARCH, 2001, 11 (10) :1725-1729
[3]  
Rozen S, 2000, Methods Mol Biol, V132, P365