SNPs in putative regulatory regions identified by human mouse comparative sequencing and transcription factor binding site data

被引:8
作者
Banerjee, P
Bahlo, M
Schwartz, JR
Loots, GG
Houston, KA
Dubchak, I
Speed, TP
Rubin, EM [1 ]
机构
[1] Univ Calif Berkeley, Lawrence Berkeley Lab, Genome Sci Dept, Berkeley, CA 94720 USA
[2] Royal Melbourne Hosp, Walter & Eliza Hall Inst Med Res, Div Genet & Bioinformat, Parkville, Vic 3050, Australia
[3] Univ Calif Berkeley, Lawrence Berkeley Lab, Natl Energy Res Supercomp Ctr, Berkeley, CA 94720 USA
关键词
D O I
10.1007/s00335-002-2169-4
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
[No abstract available]
引用
收藏
页码:554 / 557
页数:4
相关论文
共 15 条
  • [1] [Anonymous], 2000, ARLEQUIN SOFTWARE PO
  • [2] Characterization of single-nucleotide polymorphisms in coding regions of human genes
    Cargill, M
    Altshuler, D
    Ireland, J
    Sklar, P
    Ardlie, K
    Patil, N
    Lane, CR
    Lim, EP
    Kalyanaraman, N
    Nemesh, J
    Ziaugra, L
    Friedland, L
    Rolfe, A
    Warrington, J
    Lipshutz, R
    Daley, GQ
    Lander, ES
    [J]. NATURE GENETICS, 1999, 22 (03) : 231 - 238
  • [3] The human granulocyte-macrophage colony-stimulating factor gene is autonomously regulated in vivo by an inducible tissue-specific enhancer
    Cockerill, PN
    Bert, AG
    Roberts, D
    Vadas, MA
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (26) : 15097 - 15102
  • [4] Active conservation of noncoding sequences revealed by three-way species comparisons
    Dubchak, I
    Brudno, M
    Loots, GG
    Pachter, L
    Mayor, C
    Rubin, EM
    Frazer, KA
    [J]. GENOME RESEARCH, 2000, 10 (09) : 1304 - 1306
  • [5] Analysis of vertebrate SCL loci identifies conserved enhancers
    Göttgens, B
    Barton, LM
    Gilbert, JGR
    Bench, AJ
    Sanchez, MJ
    Bahn, S
    Mistry, S
    Grafham, D
    McMurray, A
    Vaudin, M
    Amaya, E
    Bentley, DR
    Green, AR
    [J]. NATURE BIOTECHNOLOGY, 2000, 18 (02) : 181 - 186
  • [6] Patterns of single-nucleotide polymorphisms in candidate genes for blood-pressure homeostasis
    Halushka, MK
    Fan, JB
    Bentley, K
    Hsie, L
    Shen, NP
    Weder, A
    Cooper, R
    Lipshutz, R
    Chakravarti, A
    [J]. NATURE GENETICS, 1999, 22 (03) : 239 - 247
  • [7] T-cell subset-specific expression of the IL-4 gene is regulated by a silencer element and STAT6
    Kubo, M
    Ransom, J
    Webb, D
    Hashimoto, Y
    Tada, T
    Nakayama, T
    [J]. EMBO JOURNAL, 1997, 16 (13) : 4007 - 4020
  • [8] Li W.-H., 1997, MOL EVOLUTION
  • [9] rVista for comparative sequence-based discovery of functional transcription factor binding sites
    Loots, GG
    Ovcharenko, I
    Pachter, L
    Dubchak, I
    Rubin, EM
    [J]. GENOME RESEARCH, 2002, 12 (05) : 832 - 839
  • [10] Identification of a coordinate regulator of interleukins 4, 13, and 5 by cross-species sequence comparisons
    Loots, GG
    Locksley, RM
    Blakespoor, CM
    Wang, ZE
    Miller, W
    Rubin, EM
    Frazer, KA
    [J]. SCIENCE, 2000, 288 (5463) : 136 - 140