BASC:: an integrated bioinformatics system for Brassica research

被引：11

作者：

Erwin, Timothy A.

Jewell, Erica G.

Love, Christopher G.

Lim, Geraldine A. C.

Li, Xi

Chapman, Ross

Batley, Jacqueline

Stajich, Jason E.

Mongin, Emmanuel

Stupka, Elia

Ross, Bruce

Spangenberg, German

Edwards, David

机构：

[1] Victorian AgriBiosci Ctr, Dept Primary Ind, Plant Biotechnol Ctr, Bundoora, Vic 3083, Australia

[2] Victorian AgriBiosci Ctr, Dept Primary Ind, Victorian Bioinformat Consortium, Bundoora, Vic 3083, Australia

[3] Victorian AgriBiosci Ctr, Dept Primary Ind, Australian Ctr Plant Funct Genom, Bundoora, Vic 3083, Australia

[4] Univ Calif Berkeley, Berkeley, CA 94720 USA

[5] McGill Univ, McGill Ctr Bioinformat, Montreal, PQ H3A 2T5, Canada

[6] Telethon Inst Genet & Med, I-80131 Naples, Italy

[7] IBM Australia, Southbank, Vic, Australia

来源：

NUCLEIC ACIDS RESEARCH | 2007年 / 35卷

关键词：

D O I：

10.1093/nar/gkl998

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

The BASC system provides tools for the integrated mining and browsing of genetic, genomic and phenotypic data. This public resource hosts information on Brassica species supporting the Multinational Brassica Genome Sequencing Project, and is based upon five distinct modules, ESTDB, Microarray, MarkerQTL, CMap and EnsEMBL. ESTDB hosts expressed gene sequences and related annotation derived from comparison with GenBank, UniRef and the genome sequence of Arabidopsis. The Microarray module hosts gene expression information related to genes annotated within ESTDB. MarkerQTL is the most complex module and integrates information on genetic markers, maps, individuals, genotypes and traits. Two further modules include an Arabidopsis EnsEMBL genome viewer and the CMap comparative genetic map viewer for the visualization and integration of genetic and genomic data. The database is accessible at http://bioinformatics.pbcbasc.latrobe.edu.au.

引用

页码：D870 / D873

页数：4

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