Ecology of the rare microbial biosphere of the Arctic Ocean

被引:452
作者
Galand, Pierre E. [1 ,5 ,6 ]
Casamayor, Emilio O. [1 ]
Kirchman, David L. [2 ]
Lovejoy, Connie [3 ,4 ]
机构
[1] CSIC, Ctr Estudis Avancats Blanes, Dept Continental Ecol Limnol, Blanes, Spain
[2] Univ Delaware, Sch Marine Sci & Policy, Lewes, DE 19958 USA
[3] Univ Laval, Dept Biol, Quebec City, PQ G1V 0A6, Canada
[4] Univ Laval, Inst Biol Integrat & Syst, Quebec City, PQ G1V 0A6, Canada
[5] Univ Paris 06, F-75252 Paris 05, France
[6] Observ Oceanol, LOBB, UMR 7621, CNRS, F-66651 Banyuls Sur Mer, France
基金
美国国家科学基金会;
关键词
abundance distribution; bacteria; archaea; pyrosequencing; biogeography; BACTERIAL BIOMASS PRODUCTION; MOLECULAR EVIDENCE; PLANKTONIC FORAMINIFERS; COMMUNITY STRUCTURE; DIVERSITY; BACTERIOPLANKTON; ASSEMBLAGES; ABUNDANCE; ARCHAEA; POPULATIONS;
D O I
10.1073/pnas.0908284106
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Understanding the role of microbes in the oceans has focused on taxa that occur in high abundance; yet most of the marine microbial diversity is largely determined by a long tail of low-abundance taxa. This rare biosphere may have a cosmopolitan distribution because of high dispersal and low loss rates, and possibly represents a source of phylotypes that become abundant when environmental conditions change. However, the true ecological role of rare marine microorganisms is still not known. Here, we use pyrosequencing to describe the structure and composition of the rare biosphere and to test whether it represents cosmopolitan taxa or whether, similar to abundant phylotypes, the rare community has a biogeography. Our examination of 740,353 16S rRNA gene sequences from 32 bacterial and archaeal communities from various locations of the Arctic Ocean showed that rare phylotypes did not have a cosmopolitan distribution but, rather, followed patterns similar to those of the most abundant members of the community and of the entire community. The abundance distributions of rare and abundant phylotypes were different, following a log-series and log-normal model, respectively, and the taxonomic composition of the rare biosphere was similar to the composition of the abundant phylotypes. We conclude that the rare biosphere has a biogeography and that its tremendous diversity is most likely subjected to ecological processes such as selection, speciation, and extinction.
引用
收藏
页码:22427 / 22432
页数:6
相关论文
共 44 条
[1]   Major gradients in putatively nitrifying and non-nitrifying Archaea in the deep North Atlantic [J].
Agogue, Helene ;
Brink, Maaike ;
Dinasquet, Julie ;
Herndl, Gerhard J. .
NATURE, 2008, 456 (7223) :788-U72
[2]   Are Archaea inherently less diverse than Bacteria in the same environments? [J].
Aller, Josephine Y. ;
Kemp, Paul F. .
FEMS MICROBIOLOGY ECOLOGY, 2008, 65 (01) :74-87
[3]  
Azam F, 2007, NAT REV MICROBIOL, V5, P782, DOI 10.1038/nrmicro1747
[4]   Identification of and spatio-temporal differences between microbial assemblages from two neighboring sulfurous lakes:: Comparison by microscopy and denaturing gradient gel electrophoresis [J].
Casamayor, EO ;
Schäfer, H ;
Bañeras, L ;
Pedrós-Alió, C ;
Muyzer, G .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2000, 66 (02) :499-508
[5]   Contribution of major bacterial groups to bacterial biomass production (thymidine and leucine incorporation) in the Delaware estuary [J].
Cottrell, MT ;
Kirchman, DL .
LIMNOLOGY AND OCEANOGRAPHY, 2003, 48 (01) :168-178
[6]   Molecular evidence for genetic mixing of Arctic and Antarctic subpolar populations of planktonic foraminifers [J].
Darling, KF ;
Wade, CM ;
Stewart, IA ;
Kroon, D ;
Dingle, R ;
Brown, AJL .
NATURE, 2000, 405 (6782) :43-47
[7]   Molecular evidence links cryptic diversification in polar planktonic protists to quaternary climate dynamics [J].
Darling, KF ;
Kucera, M ;
Pudsey, CJ ;
Wade, CM .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (20) :7657-7662
[8]   Molecular evidence of cryptic speciation in planktonic foraminifers and their relation to oceanic provinces [J].
de Vargas, C ;
Norris, R ;
Zaninetti, L ;
Gibb, SW ;
Pawlowski, J .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1999, 96 (06) :2864-2868
[9]   The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing [J].
Dethlefsen, Les ;
Huse, Sue ;
Sogin, Mitchell L. ;
Relman, David A. .
PLOS BIOLOGY, 2008, 6 (11) :2383-2400
[10]   MUSCLE: multiple sequence alignment with high accuracy and high throughput [J].
Edgar, RC .
NUCLEIC ACIDS RESEARCH, 2004, 32 (05) :1792-1797