Stability effects of mutations and protein evolvability

被引:570
作者
Tokuriki, Nobuhiko [1 ]
Tawfik, Dan S. [1 ]
机构
[1] Weizmann Inst Sci, Dept Biol Chem, IL-76100 Rehovot, Israel
基金
以色列科学基金会;
关键词
DIRECTED EVOLUTION; SEQUENCE; PREDICTION; THERMOSTABILITY; PERSPECTIVE; ROBUSTNESS; CONSTRAINT; EPISTASIS; VIEW;
D O I
10.1016/j.sbi.2009.08.003
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The past several years have seen novel insights at the interface of protein biophysics and evolution. The accepted paradigm that proteins can tolerate nearly any amino acid substitution has been replaced by the view that the deleterious effects of mutations, and especially their tendency to undermine the thermodynamic and kinetic stability of protein, is a major constraint on protein evolvability-the ability of proteins to acquire changes in sequence and function. We summarize recent findings regarding how mutations affect protein stability, and how stability affects protein evolution. We describe ways of predicting and analyzing stability effects of mutations, and mechanisms that buffer or compensate for these destabilizing effects and thereby promote protein evolvabilty, in nature and in the laboratory.
引用
收藏
页码:596 / 604
页数:9
相关论文
共 65 条
[1]   Intense neutral drifts yield robust and evolvable consensus proteins [J].
Bershtein, Shimon ;
Goldin, Korina ;
Tawfik, Dan S. .
JOURNAL OF MOLECULAR BIOLOGY, 2008, 379 (05) :1029-1044
[2]   Robustness-epistasis link shapes the fitness landscape of a randomly drifting protein [J].
Bershtein, Shimon ;
Segal, Michal ;
Bekerman, Roy ;
Tokuriki, Nobuhiko ;
Tawfik, Dan S. .
NATURE, 2006, 444 (7121) :929-932
[3]   Protein stability promotes evolvability [J].
Bloom, JD ;
Labthavikul, ST ;
Otey, CR ;
Arnold, FH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2006, 103 (15) :5869-5874
[4]   Thermodynamic prediction of protein neutrality [J].
Bloom, JD ;
Silberg, JJ ;
Wilke, CO ;
Drummond, DA ;
Adami, C ;
Arnold, FH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (03) :606-611
[5]   In the light of directed evolution: Pathways of adaptive protein evolution [J].
Bloom, Jesse D. ;
Arnold, Frances H. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2009, 106 :9995-10000
[6]   How are model protein structures distributed in sequence space? [J].
BornbergBauer, E .
BIOPHYSICAL JOURNAL, 1997, 73 (05) :2393-2403
[7]   Investigating the effects of mutations on protein aggregation in the cell [J].
Calloni, G ;
Zoffoli, S ;
Stefani, M ;
Dobson, CM ;
Chiti, F .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2005, 280 (11) :10607-10613
[8]   Genetic constraints on protein evolution [J].
Camps, Manel ;
Herman, Asael ;
Loh, Ern ;
Loeb, Lawrence A. .
CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2007, 42 (05) :313-326
[9]   Predicting protein stability changes from sequences using support vector machines [J].
Capriotti, E ;
Fariselli, P ;
Calabrese, R ;
Casadio, R .
BIOINFORMATICS, 2005, 21 :54-58
[10]   I-Mutant2.0: predicting stability changes upon mutation from the protein sequence or structure [J].
Capriotti, E ;
Fariselli, P ;
Casadio, R .
NUCLEIC ACIDS RESEARCH, 2005, 33 :W306-W310