Molecular simulation of protein aggregation

被引:24
作者
Bratko, Dusan
Cellmer, Troy
Prausnitz, John M.
Blanch, Harvey W. [1 ]
机构
[1] Univ Calif Berkeley, Dept Chem Engn, Berkeley, CA 94720 USA
[2] Virginia Commonwealth Univ, Dept Chem, Richmond, VA 23284 USA
[3] NIDDK, Phys Chem Lab, NIH, Bethesda, MD 20892 USA
[4] Lawrence Berkeley Natl Lab, Div Chem Sci, Berkeley, CA 94720 USA
关键词
proteins; aggregation prevention; computer modeling;
D O I
10.1002/bit.21232
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Computer simulation offers unique possibities for investigating molecular-level phenomena difficult to probe experimentally. Drawing from a wealth of studies concerning protein folding, computational studies of protein aggregation are emerging. These studies have been successful in capturing aspects of aggregation known from experiment and are being used to refine experimental methods aimed at abating aggregation. Here we review molecular simulation studies of protein aggregation conducted in our laboratory. Specific attention is devoted to issues with implications for biotechnology.
引用
收藏
页码:1 / 8
页数:8
相关论文
共 36 条
  • [1] Oligomerization and phase separation in globular protein solutions
    Asherie, N
    Pande, J
    Lomakin, A
    Ogun, O
    Hanson, SRA
    Smith, JB
    Benedek, GB
    [J]. BIOPHYSICAL CHEMISTRY, 1998, 75 (03) : 213 - 227
  • [2] Effect of single-point sequence alterations on the aggregation propensity of a model protein
    Bratko, D
    Cellmer, T
    Prausnitz, JM
    Blanch, HW
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2006, 128 (05) : 1683 - 1691
  • [3] Effect of secondary structure on protein aggregation: A replica exchange simulation study
    Bratko, D
    Blanch, HW
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2003, 118 (11) : 5185 - 5194
  • [4] Competition between protein folding and aggregation: A three-dimensional lattice-model simulation
    Bratko, D
    Blanch, HW
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2001, 114 (01) : 561 - 569
  • [5] Mechanistic studies of the folding of human lysozyme and the origin of amyloidogenic behavior in its disease-related variants
    Canet, D
    Sunde, M
    Last, AM
    Miranker, A
    Spencer, A
    Robinson, CV
    Dobson, CM
    [J]. BIOCHEMISTRY, 1999, 38 (20) : 6419 - 6427
  • [6] Thermodynamics of folding and association of lattice-model proteins
    Cellmer, T
    Bratko, D
    Prausnitz, JM
    Blanch, H
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2005, 122 (17)
  • [7] Protein-folding landscapes in multichain systems
    Cellmer, T
    Bratko, D
    Prausnitz, JM
    Blanch, H
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2005, 102 (33) : 11692 - 11697
  • [8] The competition between protein folding and aggregation: Off-lattice minimalist model studies
    Cellmer, T
    Bratko, D
    Prausnitz, JM
    Blanch, H
    [J]. BIOTECHNOLOGY AND BIOENGINEERING, 2005, 89 (01) : 78 - 87
  • [9] THE PROTEIN FOLDING PROBLEM
    CHAN, HS
    DILL, KA
    [J]. PHYSICS TODAY, 1993, 46 (02) : 24 - 32
  • [10] Physical stability of proteins in aqueous solution: Mechanism and driving forces in nonnative protein aggregation
    Chi, EY
    Krishnan, S
    Randolph, TW
    Carpenter, JF
    [J]. PHARMACEUTICAL RESEARCH, 2003, 20 (09) : 1325 - 1336