Cell cycle Start is coupled to entry into the yeast metabolic cycle across diverse strains and growth rates

被引:40
作者
Burnetti, Anthony J. [1 ,2 ,3 ,4 ]
Aydin, Mert [3 ,4 ]
Buchler, Nicolas E. [3 ,4 ]
机构
[1] Duke Univ, Program Cellular & Mol Biol, Durham, NC 27708 USA
[2] Duke Univ, Univ Program Genet & Genom, Durham, NC 27708 USA
[3] Duke Univ, Dept Biol, Durham, NC 27708 USA
[4] Duke Univ, Ctr Genom & Computat Biol, Durham, NC 22710 USA
基金
美国国家卫生研究院;
关键词
RESPIRATORY OSCILLATIONS; SACCHAROMYCES-CEREVISIAE; DIVISION CYCLE; CONTINUOUS-CULTURE; GENE-EXPRESSION; DNA-REPLICATION; PHASE; STATE; TIME; TRANSCRIPTION;
D O I
10.1091/mbc.E15-07-0454
中图分类号
Q2 [细胞生物学];
学科分类号
071013 [干细胞生物学];
摘要
Cells have evolved oscillators with different frequencies to coordinate periodic processes. Here we studied the interaction of two oscillators, the cell division cycle (CDC) and the yeast metabolic cycle (YMC), in budding yeast. Previous work suggested that the CDC and YMC interact to separate high oxygen consumption (HOC) from DNA replication to prevent genetic damage. To test this hypothesis, we grew diverse strains in chemostat and measured DNA replication and oxygen consumption with high temporal resolution at different growth rates. Our data showed that HOC is not strictly separated from DNA replication; rather, cell cycle Start is coupled with the initiation of HOC and catabolism of storage carbohydrates. The logic of this YMC-CDC coupling may be to ensure that DNA replication and cell division occur only when sufficient cellular energy reserves have accumulated. Our results also uncovered a quantitative relationship between CDC period and YMC period across different strains. More generally, our approach shows how studies in genetically diverse strains efficiently identify robust phenotypes and steer the experimentalist away from strain-specific idiosyncrasies.
引用
收藏
页码:64 / 74
页数:11
相关论文
共 52 条
[1]
Time resolved DNA occupancy dynamics during the respiratory oscillation uncover a global reset point in the yeast growth program [J].
Amariei, Cornelia ;
Machne, Rainer ;
Stolc, Viktor ;
Soga, Tomoyoshi ;
Tomita, Masaru ;
Murray, Douglas B. .
MICROBIAL CELL, 2014, 1 (09) :279-288
[2]
[Anonymous], NAT REV MOL CELL BIO
[3]
[Anonymous], ARCH MIKROBIOL
[4]
Robust synchronization of coupled circadian and cell cycle oscillators in single mammalian cells [J].
Bieler, Jonathan ;
Cannavo, Rosamaria ;
Gustafson, Kyle ;
Gobet, Cedric ;
Gatfield, David ;
Naef, Felix .
MOLECULAR SYSTEMS BIOLOGY, 2014, 10 (07)
[5]
Homeostatic adjustment and metabolic remodeling in glucose-limited yeast cultures [J].
Brauer, MJ ;
Saldanha, AJ ;
Dolinski, K ;
Botstein, D .
MOLECULAR BIOLOGY OF THE CELL, 2005, 16 (05) :2503-2517
[6]
Genetic Basis of Metabolome Variation in Yeast [J].
Breunig, Jeffrey S. ;
Hackett, Sean R. ;
Rabinowitz, Joshua D. ;
Kruglyak, Leonid .
PLOS GENETICS, 2014, 10 (03)
[7]
Restriction of DNA replication to the reductive phase of the metabolic cycle protects genome integrity [J].
Chen, Zheng ;
Odstrcil, Elizabeth A. ;
Tu, Benjamin P. ;
McKnight, Steven L. .
SCIENCE, 2007, 316 (5833) :1916-1919
[8]
The onset of fermentative metabolism in continuous cultures depends on the catabolite repression properties of Saccharomyces cerevisiae [J].
Cortassa, S ;
Aon, MA .
ENZYME AND MICROBIAL TECHNOLOGY, 1998, 22 (08) :705-712
[9]
Ditto W, 2002, NATURE, V415, P736, DOI 10.1038/415736b
[10]
Phase locking and multiple oscillating attractors for the coupled mammalian clock and cell cycle [J].
Feillet, Celine ;
Krusche, Peter ;
Tamanini, Filippo ;
Janssens, Roel C. ;
Downey, Mike J. ;
Martin, Patrick ;
Teboul, Michele ;
Saito, Shoko ;
Levi, Francis A. ;
Bretschneider, Till ;
van der Horst, Gijsbertus T. J. ;
Delaunay, Franck ;
Rand, David A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2014, 111 (27) :9828-9833