High-accuracy computation of reaction barriers in enzymes

被引:217
作者
Claeyssens, Frederik
Harvey, Jeremy N.
Manby, Frederick R.
Mata, Ricardo A.
Mulholland, Adrian J.
Ranaghan, Kara E.
Schuetz, Martin
Thiel, Stephan
Thiel, Walter
Werner, Hans-Joachim
机构
[1] Univ Bristol, Sch Chem, Bristol BS8 1TS, Avon, England
[2] Max Planck Inst Kohlenforsch, D-45470 Mulheim, Germany
[3] Univ Stuttgart, Inst Theoret Chem, D-70569 Stuttgart, Germany
[4] Univ Regensburg, Inst Phys & Theoret Chem, D-93040 Regensburg, Germany
基金
英国工程与自然科学研究理事会;
关键词
ab initio calculations; enzyme catalysis; QM/MM calculations; reaction mechanisms; transition-state theory;
D O I
10.1002/anie.200602711
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Modeling enzyme catalysis: High-level ab initio QM/MM calculations yield activation enthalpies and free energies for chorismate mutase and pora-hydroxybenzoate hydroxylase that are in excellent agreement with experimental results. Enzyme reactivity is described quantitatively by transition-state theory. (Figure Presented) © 2006 Wiley-VCH Verlag GmbH & Co. KGaA.
引用
收藏
页码:6856 / 6859
页数:4
相关论文
共 29 条
[1]   DENSITY-FUNCTIONAL THERMOCHEMISTRY .3. THE ROLE OF EXACT EXCHANGE [J].
BECKE, AD .
JOURNAL OF CHEMICAL PHYSICS, 1993, 98 (07) :5648-5652
[2]   Molecular dynamics study of oxygenation reactions catalysed by the enzyme p-hydroxybenzoate hydroxylase [J].
Billeter, SR ;
Hanser, CFW ;
Mordasini, TZ ;
Scholten, M ;
Thiel, W ;
van Gunsteren, WF .
PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2001, 3 (05) :688-695
[3]   Multiple high-level QM/MM reaction paths demonstrate transition-state stabilization in chorismate mutase: correlation of barrier height with transition-state stabilization [J].
Claeyssens, F ;
Ranaghan, KE ;
Manby, FR ;
Harvey, JN ;
Mulholland, AJ .
CHEMICAL COMMUNICATIONS, 2005, (40) :5068-5070
[4]   Multiple-steering QM-MM calculation of the free energy profile in chorismate mutase [J].
Crespo, A ;
Martí, MA ;
Estrin, DA ;
Roitberg, AE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2005, 127 (19) :6940-6941
[5]  
ENTSCH B, 1991, J BIOL CHEM, V266, P17341
[6]   FLAVOPROTEIN STRUCTURE AND MECHANISM .1. STRUCTURE AND MECHANISM OF PARA-HYDROXYBENZOATE HYDROXYLASE [J].
ENTSCH, B ;
VANBERKEL, WJH .
FASEB JOURNAL, 1995, 9 (07) :476-483
[7]   How enzymes work: Analysis by modern rate theory and computer simulations [J].
Garcia-Viloca, M ;
Gao, J ;
Karplus, M ;
Truhlar, DG .
SCIENCE, 2004, 303 (5655) :186-195
[8]   Local treatment of electron correlation in coupled cluster theory [J].
Hampel, C ;
Werner, HJ .
JOURNAL OF CHEMICAL PHYSICS, 1996, 104 (16) :6286-6297
[9]  
HUSAIN M, 1980, J BIOL CHEM, V255, P4189
[10]   Is chorismate mutase a prototypic entropy trap? Activation parameters for the Bacillus subtilis enzyme [J].
Kast, P ;
AsifUllah, M ;
Hilvert, D .
TETRAHEDRON LETTERS, 1996, 37 (16) :2691-2694