A tick-borne segmented RNA virus contains genome segments derived from unsegmented viral ancestors

被引:170
作者
Qin, Xin-Cheng [1 ]
Shi, Mang [1 ,2 ,3 ]
Tian, Jun-Hua [4 ]
Lin, Xian-Dan [5 ]
Gao, Dong-Ya [1 ]
He, Jin-Rong [1 ]
Wang, Jian-Bo [1 ]
Li, Ci-Xiu [1 ]
Kang, Yan-Jun [1 ]
Yu, Bin [4 ]
Zhou, Dun-Jin [4 ]
Xu, Jianguo [1 ]
Plyusnin, Alexander [1 ,6 ]
Holmes, Edward C. [1 ,2 ,3 ]
Zhang, Yong-Zhen [1 ]
机构
[1] Chinese Ctr Dis Control & Prevent, State Key Lab Infect Dis Prevent & Control, Collaborat Innovat Ctr Diag & Treatment Infect Di, Dept Zoonoses,Natl Inst Communicable Dis Control, Beijing 100206, Peoples R China
[2] Univ Sydney, Marie Bashir Inst Infect Dis & Biosecur, Charles Perkins Ctr, Sch Biol Sci, Sydney, NSW 2006, Australia
[3] Univ Sydney, Sydney Med Sch, Sydney, NSW 2006, Australia
[4] Wuhan Ctr Dis Control & Prevent, Wuhan 430015, Peoples R China
[5] Wenzhou Ctr Dis Control & Prevent, Wenzhou 325001, Peoples R China
[6] Univ Helsinki, Dept Virol, Haartman Inst, Helsinki 00014, Finland
基金
中国国家自然科学基金; 英国医学研究理事会;
关键词
evolution; segmentation; ENCEPHALITIS-VIRUS; TOXOCARA-CANIS; FLAVIVIRUS; IDENTIFICATION; TRANSMISSION; PHYLOGENY; PROTEINS; GENES; CHINA;
D O I
10.1073/pnas.1324194111
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Although segmented and unsegmented RNA viruses are commonplace, the evolutionary links between these two very different forms of genome organization are unclear. We report the discovery and characterization of a tick-borne virus-Jingmen tick virus (JMTV)-that reveals an unexpected connection between segmented and unsegmented RNA viruses. The JMTV genome comprises four segments, two of which are related to the nonstructural protein genes of the genus Flavivirus (family Flaviviridae), whereas the remaining segments are unique to this virus, have no known homologs, and contain a number of features indicative of structural protein genes. Remarkably, homology searching revealed that sequences related to JMTV were present in the cDNA library from Toxocara canis (dog roundworm; Nematoda), and that shared strong sequence and structural resemblances. Epidemiological studies showed that JMTV is distributed in tick populations across China, especially Rhipicephalus and Haemaphysalis spp., and experiences frequent host-switching and genomic reassortment. To our knowledge, JMTV is the first example of a segmented RNA virus with a genome derived in part from unsegmented viral ancestors.
引用
收藏
页码:6744 / 6749
页数:6
相关论文
共 30 条
[1]   Long-term transmission of defective RNA viruses in humans and Aedes mosquitoes [J].
Aaskov, J ;
Buzacott, K ;
Thu, HM ;
Lowry, K ;
Holmes, EC .
SCIENCE, 2006, 311 (5758) :236-238
[2]   Structure and functionality in flavivirus NS-proteins: Perspectives for drug design [J].
Bollati, Michela ;
Alvarez, Karin ;
Assenberg, Rene ;
Baronti, Cecile ;
Canard, Bruno ;
Cook, Shelley ;
Coutard, Bruno ;
Decroly, Etienne ;
de Lamballerie, Xavier ;
Gould, Ernest A. ;
Grard, Gilda ;
Grimes, Jonathan M. ;
Hilgenfeld, Rolf ;
Jansson, Anna M. ;
Malet, Helene ;
Mancini, Erika J. ;
Mastrangelo, Eloise ;
Mattevi, Andrea ;
Milani, Mario ;
Moureau, Gregory ;
Neyts, Johan ;
Owens, Raymond J. ;
Ren, Jingshan ;
Selisko, Barbara ;
Speroni, Silvia ;
Steuber, Holger ;
Stuart, David I. ;
Unge, Torsten ;
Bolognesi, Martino .
ANTIVIRAL RESEARCH, 2010, 87 (02) :125-148
[3]   Four abundant novel transcript genes from Toxocara canis with unrelated coding sequences share untranslated region tracts implicated in the control of gene expression [J].
Callister, Deborah M. ;
Winter, Alan D. ;
Page, Antony P. ;
Maizels, Rick M. .
MOLECULAR AND BIOCHEMICAL PARASITOLOGY, 2008, 162 (01) :60-70
[4]   Isolation of a novel species of flavivirus and a new strain of Culex flavivirus (Flaviviridae) from a natural mosquito population in Uganda [J].
Cook, Shelley ;
Moureau, Gregory ;
Harbach, Ralph E. ;
Mukwaya, Louis ;
Goodger, Kim ;
Ssenfuka, Fred ;
Gould, Ernest ;
Holmes, Edward C. ;
de Lamballerie, Xavier .
JOURNAL OF GENERAL VIROLOGY, 2009, 90 :2669-2678
[5]   New Insights into Flavivirus Nonstructural Protein 5 [J].
Davidson, Andrew D. .
ADVANCES IN VIRUS RESEARCH, VOL 74, 2009, 74 :41-101
[6]   A novel virus genome discovered in an extreme environment suggests recombination between unrelated groups of RNA and DNA viruses [J].
Diemer, Geoffrey S. ;
Stedman, Kenneth M. .
BIOLOGY DIRECT, 2012, 7
[7]   Evolutionary transition toward defective RNAs that are infectious by complementation [J].
García-Arriaza, J ;
Manrubia, SC ;
Toja, M ;
Domingo, E ;
Escarmís, C .
JOURNAL OF VIROLOGY, 2004, 78 (21) :11678-11685
[8]   The ecodist package for dissimilarity-based analysis of ecological data [J].
Goslee, Sarah C. ;
Urban, Dean L. .
JOURNAL OF STATISTICAL SOFTWARE, 2007, 22 (07) :1-19
[9]   Full-length transcriptome assembly from RNA-Seq data without a reference genome [J].
Grabherr, Manfred G. ;
Haas, Brian J. ;
Yassour, Moran ;
Levin, Joshua Z. ;
Thompson, Dawn A. ;
Amit, Ido ;
Adiconis, Xian ;
Fan, Lin ;
Raychowdhury, Raktima ;
Zeng, Qiandong ;
Chen, Zehua ;
Mauceli, Evan ;
Hacohen, Nir ;
Gnirke, Andreas ;
Rhind, Nicholas ;
di Palma, Federica ;
Birren, Bruce W. ;
Nusbaum, Chad ;
Lindblad-Toh, Kerstin ;
Friedman, Nir ;
Regev, Aviv .
NATURE BIOTECHNOLOGY, 2011, 29 (07) :644-U130
[10]   A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood [J].
Guindon, S ;
Gascuel, O .
SYSTEMATIC BIOLOGY, 2003, 52 (05) :696-704