In vivo robustness analysis of cell division cycle genes in Saccharomyces cerevisiae

被引:85
作者
Moriya, Hisao [1 ]
Shimizu-Yoshida, Yuki
Kitano, Hiroaki
机构
[1] ERATO, SORST, Kitano Symbiot Syst Project, Japan Sci & Technol Agcy,Shibuya Ku, Tokyo, Japan
[2] Syst Biol Inst, Shibuya Ku, Tokyo, Japan
[3] Sony Comp Sci Labs Inc, Tokyo, Japan
来源
PLOS GENETICS | 2006年 / 2卷 / 07期
关键词
D O I
10.1371/journal.pgen.0020111
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Intracellular biochemical parameters, such as the expression level of gene products, are considered to be optimized so that a biological system, including the parameters, works effectively. Those parameters should have some permissible range so that the systems have robustness against perturbations, such as noise in gene expression. However, little is known about the permissible range in real cells because there has been no experimental technique to test it. In this study, we developed a genetic screening method, named "genetic tug-of-war'' (gTOW) that evaluates upper limit copy numbers of genes in a model eukaryote Saccharomyces cerevisiae, and we applied it for 30 cell-cycle related genes (CDC genes). The experiment provided unique quantitative data that could be used to argue the system-level properties of the cell cycle such as robustness and fragility. The data were used to evaluate the current computational model, and refinements to the model were suggested.
引用
收藏
页码:1034 / 1045
页数:12
相关论文
共 43 条
  • [1] Phosphorylation of the mitotic regulator Pds1/securin by Cdc28 is required for efficient nuclear localization of Esp1/separase
    Agarwal, R
    Cohen-Fix, O
    [J]. GENES & DEVELOPMENT, 2002, 16 (11) : 1371 - 1382
  • [2] Screening and identification of yeast sequences that cause growth inhibition when overexpressed
    Akada, R
    Yamamoto, J
    Yamashita, I
    [J]. MOLECULAR AND GENERAL GENETICS, 1997, 254 (03): : 267 - 274
  • [3] Amberg D.C., 2005, METHODS YEAST GENETI
  • [4] Robustness in simple biochemical networks
    Barkai, N
    Leibler, S
    [J]. NATURE, 1997, 387 (6636) : 913 - 917
  • [5] Bifurcation analysis of a model of mitotic control in frog eggs
    Borisuk, MT
    Tyson, JJ
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 1998, 195 (01) : 69 - 85
  • [6] The when and wheres of CDC25 phosphatases
    Boutros, R
    Dozier, C
    Ducommun, B
    [J]. CURRENT OPINION IN CELL BIOLOGY, 2006, 18 (02) : 185 - 191
  • [7] Brachmann CB, 1998, YEAST, V14, P115
  • [8] Kinetic analysis of a molecular model of the budding yeast cell cycle
    Chen, KC
    Csikasz-Nagy, A
    Gyorffy, B
    Val, J
    Novak, B
    Tyson, JJ
    [J]. MOLECULAR BIOLOGY OF THE CELL, 2000, 11 (01) : 369 - 391
  • [9] Integrative analysis of cell cycle control in budding yeast
    Chen, KC
    Calzone, L
    Csikasz-Nagy, A
    Cross, FR
    Novak, B
    Tyson, JJ
    [J]. MOLECULAR BIOLOGY OF THE CELL, 2004, 15 (08) : 3841 - 3862
  • [10] Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms
    Christie, KR
    Weng, S
    Balakrishnan, R
    Costanzo, MC
    Dolinski, K
    Dwight, SS
    Engel, SR
    Feierbach, B
    Fisk, DG
    Hirschman, JE
    Hong, EL
    Issel-Tarver, L
    Nash, R
    Sethuraman, A
    Starr, B
    Theesfeld, CL
    Andrada, R
    Binkley, G
    Dong, Q
    Lane, C
    Schroeder, M
    Botstein, D
    Cherry, JM
    [J]. NUCLEIC ACIDS RESEARCH, 2004, 32 : D311 - D314