From multidimensional replica-exchange method to multidimensional multicanonical algorithm and simulated tempering

被引:37
作者
Mitsutake, Ayori [1 ]
Okamoto, Yuko [2 ]
机构
[1] Keio Univ, Dept Phys, Kanagawa 2238522, Japan
[2] Nagoya Univ, Dept Phys, Aichi 4648602, Japan
来源
PHYSICAL REVIEW E | 2009年 / 79卷 / 04期
关键词
molecular biophysics; molecular dynamics method; Monte Carlo methods; potential energy functions; probability; random processes; spin glasses; GENERALIZED-ENSEMBLE ALGORITHMS; MONTE-CARLO SIMULATIONS; MOLECULAR-DYNAMICS; FREE-ENERGY;
D O I
10.1103/PhysRevE.79.047701
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
We discuss multidimensional generalizations of multicanonical algorithm, simulated tempering, and replica-exchange method. We generalize the original potential-energy function E-0 by adding any physical quantity V of interest as a new energy term with a coupling constant lambda. We then perform a multidimensional multicanonical simulation where a random walk in E-0 and V spaces is realized. We can alternately perform a multidimensional simulated-tempering simulation where a random walk in temperature T and parameter lambda is realized. The results of the multidimensional replica-exchange simulations can be used to determine the weight factors for these multidimensional multicanonical and simulated-tempering simulations.
引用
收藏
页数:4
相关论文
共 27 条
[1]  
[Anonymous], 1998, SPIN GLASSES RANDOM
[2]   NEW APPROACH TO SPIN-GLASS SIMULATIONS [J].
BERG, BA ;
CELIK, T .
PHYSICAL REVIEW LETTERS, 1992, 69 (15) :2292-2295
[3]   Generalized ensemble simulations for complex systems [J].
Berg, BA .
COMPUTER PHYSICS COMMUNICATIONS, 2002, 147 (1-2) :52-57
[4]   MULTICANONICAL ENSEMBLE - A NEW APPROACH TO SIMULATE 1ST-ORDER PHASE-TRANSITIONS [J].
BERG, BA ;
NEUHAUS, T .
PHYSICAL REVIEW LETTERS, 1992, 68 (01) :9-12
[5]   A unified methodological framework for the simulation of nonisothermal ensembles [J].
Escobedo, FA .
JOURNAL OF CHEMICAL PHYSICS, 2005, 123 (04)
[6]   OPTIMIZED MONTE-CARLO DATA-ANALYSIS [J].
FERRENBERG, AM ;
SWENDSEN, RH .
PHYSICAL REVIEW LETTERS, 1989, 63 (12) :1195-1198
[7]   NEW MONTE-CARLO TECHNIQUE FOR STUDYING PHASE-TRANSITIONS [J].
FERRENBERG, AM ;
SWENDSEN, RH .
PHYSICAL REVIEW LETTERS, 1988, 61 (23) :2635-2638
[8]  
Hansmann U.H. E., 1999, ANN REV COMPUTATIONA, VVI, P129
[9]   Molecular dynamics, Langevin and hybrid Monte Carlo simulations in a multicanonical ensemble [J].
Hansmann, UHE ;
Okamoto, Y ;
Eisenmenger, F .
CHEMICAL PHYSICS LETTERS, 1996, 259 (3-4) :321-330
[10]   Exchange Monte Carlo method and application to spin glass simulations [J].
Hukushima, K ;
Nemoto, K .
JOURNAL OF THE PHYSICAL SOCIETY OF JAPAN, 1996, 65 (06) :1604-1608