Molecular dynamics studies of the hydration of alpha,alpha-trehalose

被引:151
作者
Liu, Q
Schmidt, RK
Teo, B
Karplus, PA
Brady, JW
机构
[1] CORNELL UNIV,DEPT FOOD SCI,ITHACA,NY 14853
[2] CORNELL UNIV,BIOCHEM MOL & CELL BIOL SECT,ITHACA,NY 14853
关键词
D O I
10.1021/ja970798v
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Molecular dynamics simulations have been used to model the aqueous solvation of the nonreducing sugar alpha,alpha-trehalose. The anisotropic structuring of water around the trehalose molecule was calculated in a Cartesian coordinate frame fixed with respect to the sugar molecule by averaging water positions over the trajectories and was plotted in two and three dimensions relative to the sugar. The hydrogen bonding of this sugar to solvent was calculated and compared to other sugar solutes. Hydration was required to produce the experimental conformation, through the exchange of an internal hydrogen bond for similar bonds to solvent. This equilibrium conformation was found to impose extensive structuring on the adjacent solvent, with structuring extending out to at least the third ''solvation shell'', while pure liquid water exhibits such structure only in its nearest neighbors. The details of the structuring are determined by both the specific stereochemical topology of the molecule and its conformation, with considerable interplay between conformation and solvent structure. The effect of solute flexibility on the application of this solvent density mapping technique was also examined. While the extensive solvent structural perturbation induced by the solute suggests why the sugars in general are useful antidessicants and cryoprotectants, trehalose does not appear from these results to be unique in its solvation properties. In addition, the results are consistent with the suggestion that much of the effectiveness of trehalose could result from its direct binding to biological membranes and proteins rather than from unique solution properties.
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页码:7851 / 7862
页数:12
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共 85 条
[2]  
Allen M. P., 1987, Computer Simulation of Liquids
[3]   Temperature dependence of molecular conformation, dynamics, and chemical shift anisotropy of alpha,alpha-trehalose in D2O by NMR relaxation [J].
Batta, G ;
Kover, KE ;
Gervay, J ;
Hornyak, M ;
Roberts, GM .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1997, 119 (06) :1336-1345
[4]   SOLVENT-INDUCED INTERACTIONS - HYDROPHOBIC AND HYDROPHILIC PHENOMENA [J].
BENNAIM, A .
JOURNAL OF CHEMICAL PHYSICS, 1989, 90 (12) :7412-7425
[5]   STRONG FORCES BETWEEN HYDROPHILIC MACROMOLECULES - IMPLICATIONS IN BIOLOGICAL-SYSTEMS [J].
BENNAIM, A .
JOURNAL OF CHEMICAL PHYSICS, 1990, 93 (11) :8196-8210
[6]   THE MISSING TERM IN EFFECTIVE PAIR POTENTIALS [J].
BERENDSEN, HJC ;
GRIGERA, JR ;
STRAATSMA, TP .
JOURNAL OF PHYSICAL CHEMISTRY, 1987, 91 (24) :6269-6271
[7]   CONFORMATIONS IN SOLUTION OF ALPHA,ALPHA-TREHALOSE, ALPHA-D-GLUCOPYRANOSYL ALPHA-D-MANNOPYRANOSIDE, AND THEIR 1-THIOGLYCOSYL ANALOGS, AND A TENTATIVE CORRELATION OF THEIR BEHAVIOR WITH RESPECT TO THE ENZYME TREHALASE [J].
BOCK, K ;
DEFAYE, J ;
DRIGUEZ, H ;
BARGUILLOUX, E .
EUROPEAN JOURNAL OF BIOCHEMISTRY, 1983, 131 (03) :595-600
[8]  
BRADY AD, 1990, COMPUTER MODELING CA, V430
[9]  
Brady J.W., 1990, Adv. Biophys. Chem, V1, P155
[10]   THE ROLE OF HYDROGEN-BONDING IN CARBOHYDRATES - MOLECULAR-DYNAMICS SIMULATIONS OF MALTOSE IN AQUEOUS-SOLUTION [J].
BRADY, JW ;
SCHMIDT, RK .
JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (04) :958-966