On the acceptance probability of replica-exchange Monte Carlo trials

被引:186
作者
Kofke, DA [1 ]
机构
[1] SUNY Buffalo, Dept Chem Engn, Buffalo, NY 14260 USA
关键词
D O I
10.1063/1.1507776
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
An analysis is presented of the average probability of accepting an exchange trial in the parallel-tempering Monte Carlo molecular simulation method. Arguments are given that this quantity should be related to the entropy difference between the phases, and results from simulations of a simple Lennard-Jones system are presented to support this argument qualitatively. Another analysis based on the energy distributions of a replica pair is presented, and an exact expression for the trial-move acceptance probability in terms of the overlap of these distributions is derived. A more detailed expression is presented using an approximation of constant heat capacity, and an asymptotic form for this result, good for large system sizes, is reported. The detailed analyses are in quantitative agreement with the simulation data. It is further shown that treatment of the energy distributions as Gaussians is an inappropriate way to analyze the acceptance probability. (C) 2002 American Institute of Physics.
引用
收藏
页码:6911 / 6914
页数:4
相关论文
共 22 条
[1]   Exploration of conformational phase space in polymer melts: A comparison of parallel tempering and conventional molecular dynamics simulations [J].
Bedrov, D ;
Smith, GD .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (03) :1121-1124
[2]   Parallel excluded volume tempering for polymer melts -: art. no. 016701 [J].
Bunker, A ;
Dünweg, B .
PHYSICAL REVIEW E, 2001, 63 (01)
[3]  
Calvo F, 2001, PHYS REV E, V63, DOI 10.1103/PhysRevE.63.010902
[4]   A biased Monte Carlo scheme for zeolite structure solution [J].
Falcioni, M ;
Deem, MW .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (03) :1754-1766
[5]   Multicanonical parallel tempering [J].
Faller, R ;
Yan, QL ;
de Pablo, JJ .
JOURNAL OF CHEMICAL PHYSICS, 2002, 116 (13) :5419-5423
[6]   Comparison of three Monte Carlo conformational search strategies for a proteinlike homopolymer model: Folding thermodynamics and identification of low-energy structures [J].
Gront, D ;
Kolinski, A ;
Skolnick, J .
JOURNAL OF CHEMICAL PHYSICS, 2000, 113 (12) :5065-5071
[7]   A new combination of replica exchange Monte Carlo and histogram analysis for protein folding and thermodynamics [J].
Gront, D ;
Kolinski, A ;
Skolnick, J .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (03) :1569-1574
[8]   Parallel tempering algorithm for conformational studies of biological molecules [J].
Hansmann, UHE .
CHEMICAL PHYSICS LETTERS, 1997, 281 (1-3) :140-150
[9]   Exchange Monte Carlo method and application to spin glass simulations [J].
Hukushima, K ;
Nemoto, K .
JOURNAL OF THE PHYSICAL SOCIETY OF JAPAN, 1996, 65 (06) :1604-1608
[10]   Monte Carlo study of the phase structure of compact polymer chains [J].
Irbäck, A ;
Sandelin, E .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (24) :12256-12262