Eukaryotic gene regulation in three dimensions and its impact on genome evolution

被引:35
作者
Babu, M. Madan [1 ]
Janga, Sarath Chandra [1 ]
de Santiago, Ines [2 ,3 ]
Pombo, Ana [2 ]
机构
[1] MRC Lab Mol Biol, Cambridge CB2 0QH, England
[2] Imperial Coll Sch Med, MRC Clin Sci Ctr, London W12 0NN, England
[3] Inst Gulbenkian Ciencias, Oeiras, Portugal
基金
英国医学研究理事会;
关键词
D O I
10.1016/j.gde.2008.10.002
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Recent advances in molecular techniques and high-resolution imaging are beginning to provide exciting insights into the higher order chromatin organization within the cell nucleus and its influence on eukaryotic gene regulation. This improved understanding of gene regulation also raises fundamental questions about how spatial features might have constrained the organization of genes on eukaryotic chromosomes and how mutations that affect these processes might contribute to disease conditions. In this review, we discuss recent studies that highlight the role of spatial components in gene regulation and their impact on genome evolution. We then address implications for human diseases and outline new directions for future research.
引用
收藏
页码:571 / 582
页数:12
相关论文
共 102 条
[1]   The nuclear envelope and transcriptional control [J].
Akhtar, Asifa ;
Gasser, Susan M. .
NATURE REVIEWS GENETICS, 2007, 8 (07) :507-517
[2]   Virus infection induces NF-κB-dependent interchromosomal associations mediating monoallelic IFN-β gene expression [J].
Apostolou, Effie ;
Thanos, Dimitris .
CELL, 2008, 134 (01) :85-96
[3]   Double-strand breaks associated with repetitive DNA can reshape the genome [J].
Argueso, Juan Lucas ;
Westmoreland, James ;
Mieczkowski, Piotr A. ;
Gawel, Malgorzata ;
Petes, Thomas D. ;
Resnick, Michael A. .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (33) :11845-11850
[4]   Sensing X chromosome pairs before X inactivation via a novel X-pairing region of the Xic [J].
Augui, S. ;
Filion, G. J. ;
Huart, S. ;
Nora, E. ;
Guggiari, M. ;
Maresca, M. ;
Stewart, A. F. ;
Heard, E. .
SCIENCE, 2007, 318 (5856) :1632-1636
[5]   Estimating the prevalence and regulatory potential of the telomere looping effect in yeast transcription regulation [J].
Babu, M. Madan ;
Balaji, S. ;
Iyer, Lakshminarayan. M. ;
Aravind, L. .
CELL CYCLE, 2006, 5 (20) :2354-2363
[6]   Comparison of transcription regulatory interactions inferred from high-throughput methods: what do they reveal? [J].
Balaji, S. ;
Iyer, Lakshminarayan M. ;
Babu, M. Madan ;
Aravind, L. .
TRENDS IN GENETICS, 2008, 24 (07) :319-323
[7]   Chromatin remodelling is a major source of coexpression of linked genes in yeast [J].
Batada, Nizar N. ;
Urrutia, Araxi O. ;
Hurst, Laurence D. .
TRENDS IN GENETICS, 2007, 23 (10) :480-484
[8]   Nucleosome retention and the stochastic nature of promoter chromatin remodeling for transcription [J].
Boeger, Hinrich ;
Griesenbeck, Joachim ;
Kornberg, Roger D. .
CELL, 2008, 133 (04) :716-726
[9]   Three-dimensional maps of all chromosomes in human male fibroblast nuclei and prometaphase rosettes [J].
Bolzer, A ;
Kreth, G ;
Solovei, I ;
Koehler, D ;
Saracoglu, K ;
Fauth, C ;
Müller, S ;
Eils, R ;
Cremer, C ;
Speicher, MR ;
Cremer, T .
PLOS BIOLOGY, 2005, 3 (05) :826-842
[10]   Modeling a self-avoiding chromatin loop: Relation to the packing problem, action-at-a-distance, and nuclear context [J].
Bon, M ;
Marenduzzo, D ;
Cook, PR .
STRUCTURE, 2006, 14 (02) :197-204