Expansion of the σ-hole concept

被引:694
作者
Murray, Jane S. [1 ,2 ]
Lane, Pat [1 ]
Politzer, Peter [1 ,2 ]
机构
[1] Univ New Orleans, Dept Chem, New Orleans, LA 70148 USA
[2] Cleveland State Univ, Dept Chem, Cleveland, OH 44115 USA
关键词
Electrostatic potentials; Group IV atoms; Noncovalent interactions; sigma-hole; sigma-hole bonding; HALOGEN; MOLECULES; ELECTROPHILES; PREFERENCES; ATOMS;
D O I
10.1007/s00894-008-0386-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The term "sigma-hole" originally referred to the electron-deficient outer lobe of a half-filled p (or nearly p) orbital involved in forming a covalent bond. If the electron deficiency is sufficient, there can result a region of positive electrostatic potential which can interact attractively (non-covalently) with negative sites on other molecules (sigma-hole bonding). The interaction is highly directional, along the extension of the covalent bond giving rise to the sigma-hole. sigma-Hole bonding has been observed, experimentally and computationally, for many covalently-bonded atoms of Groups V-VII. The positive character of the sigma-hole increases in going from the lighter to the heavier (more polarizable) atoms within a Group, and as the remainder of the molecule becomes more electron-withdrawing. In this paper, we show computationally that significantly positive sigma-holes, and subsequent noncovalent interactions, can also occur for atoms of Group IV. This observation, together with analogous ones for the molecules (H3C)(2)SO, (H3C)(2)SO2 and Cl3PO, demonstrates a need to expand the interpretation of the origins of sigma-holes: (1) While the bonding orbital does require considerable p character, in view of the well-established highly directional nature of sigma-hole bonding, a sizeable s contribution is not precluded. (2) It is possible for the bonding orbital to be doubly-occupied and forming a coordinate covalent bond.
引用
收藏
页码:723 / 729
页数:7
相关论文
共 30 条
[1]  
[Anonymous], TRENDS CHEM PHYS
[2]   Halogen bonds in biological molecules [J].
Auffinger, P ;
Hays, FA ;
Westhof, E ;
Ho, PS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (48) :16789-16794
[3]   PROPERTIES OF ATOMS IN MOLECULES - ATOMIC VOLUMES [J].
BADER, RFW ;
CARROLL, MT ;
CHEESEMAN, JR ;
CHANG, C .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1987, 109 (26) :7968-7979
[4]   VAN DER WAALS VOLUMES + RADII [J].
BONDI, A .
JOURNAL OF PHYSICAL CHEMISTRY, 1964, 68 (03) :441-+
[5]  
BRINCK T, 1992, INT J QUANTUM CHEM, V44, P57
[6]   Why are dimethyl sulfoxide and dimethyl sulfone such good solvents? [J].
Clark, Timothy ;
Murray, Jane S. ;
Lane, Pat ;
Politzer, Peter .
JOURNAL OF MOLECULAR MODELING, 2008, 14 (08) :689-697
[7]  
Clark T, 2007, J MOL MODEL, V13, P291, DOI 10.1007/s00894-006-0130-2
[8]   Semiempirical GGA-type density functional constructed with a long-range dispersion correction [J].
Grimme, Stefan .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2006, 27 (15) :1787-1799
[9]   FAMILY-INDEPENDENT RELATIONSHIPS BETWEEN COMPUTED MOLECULAR-SURFACE QUANTITIES AND SOLUTE HYDROGEN-BOND ACIDITY BASICITY AND SOLUTE-INDUCED METHANOL O-H INFRARED FREQUENCY-SHIFTS [J].
HAGELIN, H ;
MURRAY, JS ;
BRINCK, T ;
BERTHELOT, M ;
POLITZER, P .
CANADIAN JOURNAL OF CHEMISTRY-REVUE CANADIENNE DE CHIMIE, 1995, 73 (04) :483-488
[10]   Stable hexacoordinated neutral complexes between silyl halides and two water or two ammonia molecules:: SiX4Y2 (X = H, F, Cl; Y=H2O, NH3) [J].
Ignatyev, IS ;
Schaefer, HF .
JOURNAL OF PHYSICAL CHEMISTRY A, 2001, 105 (32) :7665-7671