Hybrid Coarse-Graining Approach for Lipid Bilayers at Large Length and Time Scales

被引:50
作者
Ayton, Gary S.
Voth, Gregory A. [1 ]
机构
[1] Univ Utah, Ctr Biophys Modeling & Simulat, Salt Lake City, UT 84112 USA
关键词
DISSIPATIVE PARTICLE DYNAMICS; MOLECULAR-DYNAMICS; MEMBRANE CURVATURE; FORCE-FIELD; COMPUTER-SIMULATIONS; BIOMOLECULAR SYSTEMS; SURFACE-TENSION; VESICLE FUSION; MODEL; FLUCTUATIONS;
D O I
10.1021/jp8087868
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A hybrid analytic-systematic (HAS) coarse-grained (CG) lipid model is developed and employed in a large-scale, simulation of a liposome. The methodology is termed hybrid analytic-systematic because one component of the interaction between CG sites is variationally determined from the multiscale coarse-graining (MS-CG) methodology, whereas the remaining component utilizes an analytic potential. The systematic component models the in-plane center-of-mass interaction of the lipids as determined from an atomistic-level MD simulation of a bilayer. The analytic component is based on the well-known Gay-Berne ellipsoid-of-revolution liquid-crystal model and is designed to model the highly anisotropic interactions at a highly coarse-grained level. The HAS CG approach is the first step in an "aggressive" CG methodology designed to model multicomponent biological membranes at very large length and time scales.
引用
收藏
页码:4413 / 4424
页数:12
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