Adaptor-tagged competitive PCR: A novel method for measuring relative gene expression

被引:63
作者
Kato, K [1 ]
机构
[1] ERATO,LOUIS PASTEUR CTR MED RES & CELL SWITCHING PROJEC,SAKYO KU,KYOTO 606,JAPAN
关键词
D O I
10.1093/nar/25.22.4694
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A simple and reliable PCR-based method to quantitate gene expression is described, Following the digestion of double-stranded cDNA by a restriction enzyme, an adaptor is ligated to a cDNA from a first RNA sample, and another adaptor to a second RNA sample, The two adaptors share a common sequence at the outer region, but differ in size. Equal amounts of the ligated samples are mixed, and amplified by an adaptor-primer and a primer specific to the gene of interest, Products derived from the two sources differ in size, and can be separated by denaturing polyacrylamide gel electrophoresis, The ratio of the two products reveals the relative level of gene expression, Since the technique avoids the need to construct internal standards, it is especially useful for the analysis of many different gene transcripts.
引用
收藏
页码:4694 / 4696
页数:3
相关论文
共 10 条
[1]   ABSOLUTE MESSENGER-RNA QUANTIFICATION USING THE POLYMERASE CHAIN-REACTION (PCR) - A NOVEL-APPROACH BY A PCR AIDED TRANSCRIPT TITRATION ASSAY (PATTY) [J].
BECKERANDRE, M ;
HAHLBROCK, K .
NUCLEIC ACIDS RESEARCH, 1989, 17 (22) :9437-9446
[2]   A RAPID AND VERSATILE METHOD TO SYNTHESIZE INTERNAL STANDARDS FOR COMPETITIVE PCR [J].
CELI, FS ;
ZENILMAN, ME ;
SHULDINER, AR .
NUCLEIC ACIDS RESEARCH, 1993, 21 (04) :1047-1047
[3]  
Gilliland G., 1990, PCR PROTOCOLS GUIDE, P60
[4]   PHOTODESTRUCTION OF FLUOROPHORES AND OPTIMUM CONDITIONS FOR TRACE DNA DETECTION BY AUTOMATED DNA SEQUENCER [J].
KAMBARA, H ;
NAGAI, K ;
KAWAMOTO, K .
ELECTROPHORESIS, 1992, 13 (08) :542-546
[5]  
KATO K, 1995, NUCLEIC ACIDS RES, V23, P3686
[6]  
MULLIS KB, 1987, METHOD ENZYMOL, V155, P335
[7]   Quantification of Bcr-Abl transcripts in chronic myelogenous leukemia (CML) using standardized, internally controlled, competitive differential PCR (CD-PCR) [J].
Nagel, S ;
Schmidt, M ;
Thiede, C ;
Huhn, D ;
Neubauer, A .
NUCLEIC ACIDS RESEARCH, 1996, 24 (20) :4102-4103
[8]  
Okubo K, 1991, DNA Seq, V2, P137, DOI 10.3109/10425179109039684
[9]  
Sambrook J., 2002, MOL CLONING LAB MANU
[10]   HYBRIDIZATION OF DENATURED RNA AND SMALL DNA FRAGMENTS TRANSFERRED TO NITROCELLULOSE [J].
THOMAS, PS .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA-BIOLOGICAL SCIENCES, 1980, 77 (09) :5201-5205