Modeling Robustness Tradeoffs in Yeast Cell Polarization Induced by Spatial Gradients

被引:27
作者
Chou, Ching-Shan [1 ]
Nie, Qing [1 ]
Yi, Tau-Mu [2 ]
机构
[1] Univ Calif Irvine, Dept Math, Ctr Math & Computat Biol, Ctr Complex Biol Syst, Irvine, CA 92717 USA
[2] Univ Calif Irvine, Ctr Complex Biol Syst, Dept Dev & Cell Biol, Irvine, CA USA
来源
PLOS ONE | 2008年 / 3卷 / 09期
关键词
D O I
10.1371/journal.pone.0003103
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Cells localize (polarize) internal components to specific locations in response to external signals such as spatial gradients. For example, yeast cells form a mating projection toward the source of mating pheromone. There are specific challenges associated with cell polarization including amplification of shallow external gradients of ligand to produce steep internal gradients of protein components (e. g. localized distribution), response over a broad range of ligand concentrations, and tracking of moving signal sources. In this work, we investigated the tradeoffs among these performance objectives using a generic model that captures the basic spatial dynamics of polarization in yeast cells, which are small. We varied the positive feedback, cooperativity, and diffusion coefficients in the model to explore the nature of this tradeoff. Increasing the positive feedback gain resulted in better amplification, but also produced multiple steady-states and hysteresis that prevented the tracking of directional changes of the gradient. Feedforward/ feedback coincidence detection in the positive feedback loop and multi-stage amplification both improved tracking with only a modest loss of amplification. Surprisingly, we found that introducing lateral surface diffusion increased the robustness of polarization and collapsed the multiple steady-states to a single steady-state at the cost of a reduction in polarization. Finally, in a more mechanistic model of yeast cell polarization, a surface diffusion coefficient between 0.01 and 0.001 mu m(2)/s produced the best polarization performance, and this range is close to the measured value. The model also showed good gradient-sensitivity and dynamic range. This research is significant because it provides an in-depth analysis of the performance tradeoffs that confront biological systems that sense and respond to chemical spatial gradients, proposes strategies for balancing this tradeoff, highlights the critical role of lateral diffusion of proteins in the membrane on the robustness of polarization, and furnishes a framework for future spatial models of yeast cell polarization.
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页数:16
相关论文
共 34 条
[1]  
ANDREWS BW, 2006, PLOS COMP BIOL, V2
[2]   Detection of multistability, bifurcations, and hysteresis in a large class of biological positive-feed back systems [J].
Angeli, D ;
Ferrell, JE ;
Sontag, ED .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (07) :1822-1827
[3]   Uncovering directional sensing: where are we headed? [J].
不详 .
SYSTEMS BIOLOGY, 2004, 1 (01) :54-61
[4]  
[Anonymous], 1961, GROWTH FORM
[5]   Interlinked fast and slow positive feedback loops drive reliable cell decisions [J].
Brandman, O ;
Ferrett, JE ;
Li, R ;
Meyer, T .
SCIENCE, 2005, 310 (5747) :496-498
[6]  
Briggs W.L., 2000, A Multigrid Tutorial
[7]   A positive feedback loop stabilizes the guanine-nucleotide exchange factor Cdc24 at sites of polarization [J].
Butty, AC ;
Perrinjaquet, N ;
Petit, A ;
Jaquenoud, M ;
Segall, JE ;
Hofmann, K ;
Zwahlen, C ;
Peter, M .
EMBO JOURNAL, 2002, 21 (07) :1565-1576
[8]   Phosphoinositides and Rho proteins spatially regulate actin polymerization to initiate and maintain directed movement in a one-dimensional model of a motile cell [J].
Dawes, Adriana T. ;
Edelstein-Keshet, Leah .
BIOPHYSICAL JOURNAL, 2007, 92 (03) :744-768
[9]   Eukaryotic chemotaxis: Distinctions between directional sensing and polarization [J].
Devreotes, P ;
Janetopoulos, C .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2003, 278 (23) :20445-20448
[10]   Origins of cell polarity [J].
Drubin, DG ;
Nelson, WJ .
CELL, 1996, 84 (03) :335-344