Characterization of enterotoxigenic Escherichia coli by random amplification of polymorphic DNA

被引:34
作者
Pacheco, ABF
Guth, BEC
deAlmeida, DF
Ferreira, LCS
机构
[1] UNIV FED RIO DE JANEIRO,CCS,INST BIOFIS CARLOS CHAGAS FILHO,BR-21941590 RIO JANEIRO,BRAZIL
[2] ESCOLA PAULISTA MED,DISCIPLINA MICROBIOL & IMUNOL,BR-04023062 SAO PAULO,BRAZIL
基金
巴西圣保罗研究基金会;
关键词
ETEC; enteritis; Escherichia coli; RAPD; epidemiological tool; genetic polymorphism;
D O I
10.1016/0923-2508(96)80217-8
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Two enterotoxigenic Escherichia coli (ETEC) strains (H10407 and 4011-1) were characterized by random amplification of polymorphic DNA (RAPD) profiles using 10-mer oligonucleotides with diverse GC content, All tested primers yielded arrays of amplified DNA products ranging in size from 200 to 3000 bp. The effects of annealing temperature, template concentration and GC content of the primers were evaluated and an optimal reaction procedure was established. Application of the RAPD analysis to ten ETEC strains belonging to five different serotypes showed that strains of the same serotype shared identical or almost identical band profiles, suggesting a similar genetic composition. The use of RAPD profiles as a tool in epidemiological analysis of ETEC is discussed.
引用
收藏
页码:175 / 182
页数:8
相关论文
共 37 条
[1]  
ACHTMAN M, 1986, ANNU REV MICROBIOL, V40, P185, DOI 10.1146/annurev.mi.40.100186.001153
[2]   DNA DIVERSITY AMONG CLINICAL ISOLATES OF HELICOBACTER-PYLORI DETECTED BY PCR-BASED RAPD FINGERPRINTING [J].
AKOPYANZ, N ;
BUKANOV, NO ;
WESTBLOM, TU ;
KRESOVICH, S ;
BERG, DE .
NUCLEIC ACIDS RESEARCH, 1992, 20 (19) :5137-5142
[3]   COMPARISON OF 2 MOLECULAR METHODS FOR TRACING NOSOCOMIAL TRANSMISSION OF ESCHERICHIA-COLI K1 IN A NEONATAL UNIT [J].
ALOS, JI ;
LAMBERT, T ;
COURVALIN, P .
JOURNAL OF CLINICAL MICROBIOLOGY, 1993, 31 (07) :1704-1709
[4]  
BLACK RE, 1990, REV INFECT DIS, V12, pS73
[5]   DNA-SEQUENCE DIVERGENCE AMONG DERIVATIVES OF ESCHERICHIA-COLI K-12 DETECTED BY ARBITRARY PRIMER PCR (RANDOM AMPLIFIED POLYMORPHIC DNA) FINGERPRINTING [J].
BRIKUN, I ;
SUZIEDELIS, K ;
BERG, DE .
JOURNAL OF BACTERIOLOGY, 1994, 176 (06) :1673-1682
[6]   GENETIC DIVERSITY IN RELATION TO SEROTYPE IN ESCHERICHIA-COLI [J].
CAUGANT, DA ;
LEVIN, BR ;
ORSKOV, I ;
ORSKOV, F ;
EDEN, CS ;
SELANDER, RK .
INFECTION AND IMMUNITY, 1985, 49 (02) :407-413
[7]   DIFFERENTIATION OF ESCHERICHIA-COLI STRAINS USING RANDOMLY AMPLIFIED POLYMORPHIC DNA ANALYSIS [J].
CAVE, H ;
BINGEN, E ;
ELION, J ;
DENAMUR, E .
RESEARCH IN MICROBIOLOGY, 1994, 145 (02) :141-150
[8]  
CHERIFI A, 1994, J CLIN MICROBIOL, V32, P1197
[9]   CLONAL RELATIONSHIPS AMONG ESCHERICHIA-COLI SEROGROUP-06 ISOLATES FROM HUMAN AND ANIMAL INFECTIONS [J].
CHERIFI, A ;
CONTREPOIS, M ;
PICARD, B ;
GOULLET, P ;
ORSKOV, I ;
ORSKOV, F ;
DERYCKE, J .
FEMS MICROBIOLOGY LETTERS, 1991, 80 (2-3) :225-230
[10]   SURFACE-ANTIGENS FROM ESCHERICHIA-COLI O2 AND O78 STRAINS OF AVIAN ORIGIN [J].
DHOMOULIN, M ;
VANDENBOSCH, JF ;
GIRARDEAU, JP ;
BREE, A ;
BARAT, T ;
LAFONT, JP .
INFECTION AND IMMUNITY, 1990, 58 (03) :740-745