Mechanism of cysteine oxidation by a hydroxyl radical: A theoretical study

被引:27
作者
Enescu, M [1 ]
Cardey, B [1 ]
机构
[1] Univ Franche Comte, Lab Nucl Microanal, F-25000 Besancon, France
关键词
ab initio calculations; oxidation; peptides; radicals; reaction mechanisms;
D O I
10.1002/cphc.200500585
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Cysteine oxidation by HO center dot was studied at a high level of ob initio theory in both gas phase and aqueous solution. Potential energy surface scans in the gas phase performed for the model system methanethiol+HO center dot indicate that the reactants can form two intermediate states: a sulfur-oxygen adduct and a hydrogen bound reactant complex. However these states appear to play a minor role in the reaction mechanism as long as they are fast dissociating states. Thus the main reaction channel predicted at the QCISD(T)/6-311+G(2df,2pd) level of theory is the direct hydrogen atom abstraction. The reaction mechanism is not perturbed by solvation which was found to induce only small variations in the Gibbs free energy of different reactant configurations. The larger size reactant system cysteine + HO center dot was treated by the integrated molecular orbital+molecular orbital (IMOMO) hybrid method mixing the QCISD(T)/6-311 + G(2df,2pd) and the UMP2/6-311+G(d,p) levels of theory. The calculated potential energy, enthalpy and Gibbs free energy barriers are slightly different from those of methanethiol. The method gave a rate constant for cysteine oxidation in aqueous solution, k = 2.4 x 10(9) mol(-1) dm(3) s(-1), which is in good agreement with the experimental rate constant. Further analysis showed that the reaction is not very sensitive to hydrogen bonding and electrical polarity of the molecular environment.
引用
收藏
页码:912 / 919
页数:8
相关论文
共 26 条
[1]   Identification and treatment of internal rotation in normal mode vibrational analysis [J].
Ayala, PY ;
Schlegel, HB .
JOURNAL OF CHEMICAL PHYSICS, 1998, 108 (06) :2314-2325
[2]   Ab initio study of the oxidation of CH3SH to CH3SSCH3 [J].
Benassi, R .
THEORETICAL CHEMISTRY ACCOUNTS, 2004, 112 (02) :95-105
[3]   ATOMIC CHARGES DERIVED FROM SEMIEMPIRICAL METHODS [J].
BESLER, BH ;
MERZ, KM ;
KOLLMAN, PA .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 1990, 11 (04) :431-439
[4]   CALCULATION OF SMALL MOLECULAR INTERACTIONS BY DIFFERENCES OF SEPARATE TOTAL ENERGIES - SOME PROCEDURES WITH REDUCED ERRORS [J].
BOYS, SF ;
BERNARDI, F .
MOLECULAR PHYSICS, 1970, 19 (04) :553-&
[5]   Product branching fractions and kinetic isotope effects for the reactions of OH and OD radicals with CH3SH and CH3SD [J].
Butkovskaya, NI ;
Setser, DW .
JOURNAL OF PHYSICAL CHEMISTRY A, 1999, 103 (35) :6921-6929
[6]   A computational study of thiolate and selenolate oxidation by hydrogen peroxide [J].
Cardey, B ;
Enescu, M .
CHEMPHYSCHEM, 2005, 6 (06) :1175-1180
[7]   New developments in the polarizable continuum model for quantum mechanical and classical calculations on molecules in solution [J].
Cossi, M ;
Scalmani, G ;
Rega, N ;
Barone, V .
JOURNAL OF CHEMICAL PHYSICS, 2002, 117 (01) :43-54
[8]   Cellular glutathione and thiols metabolism [J].
Dickinson, DA ;
Forman, HJ .
BIOCHEMICAL PHARMACOLOGY, 2002, 64 (5-6) :1019-1026
[9]   Modeling proton mobility in acidic zeolite clusters: II. Room temperature tunneling effects from semiclassical rate theory [J].
Fermann, JT ;
Auerbach, S .
JOURNAL OF CHEMICAL PHYSICS, 2000, 112 (15) :6787-6794
[10]  
Frisch M. J., 2016, J AM CHEM SOC, DOI DOI 10.1021/JA205566W