Metatool 5.0: fast and flexible elementary modes analysis

被引：169

作者：

von Kamp, Axel ^{[1
]}

Schuster, Stefan ^{[1
]}

机构：

[1] Univ Jena, Dept Bioinformat, D-07743 Jena, Germany

来源：

BIOINFORMATICS | 2006年 / 22卷 / 15期

关键词：

D O I：

10.1093/bioinformatics/btl267

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Elementary modes analysis is a powerful tool in the constraint-based modeling of metabolic networks. In recent years, new approaches to calculating elementary modes in biochemical reaction networks have been developed. As a consequence, the program Metatool, which is one of the first programs dedicated to this purpose, has been reimplemented in order to make use of these new approaches. The performance of Metatool has been significantly increased and the new version 5.0 can now be run inside the GNU octave or Matlab environments to allow more flexible usage and integration with other tools.

引用

页码：1930 / 1931

页数：2

共 15 条

[1] Fundamental Escherichia coli biochemical pathways for biomass and energy production:: Identification of reactions [J].