Looking beyond the details: a rise in system-oriented approaches in genetics and molecular biology

被引:105
作者
Kitano, H
机构
[1] Sony Comp Sci Labs Inc, Tokyo 1410022, Japan
[2] Japan Sci & Technol Corp, ERATO, Kitano Symbiot Syst Project, Tokyo 1500001, Japan
[3] Syst Biol Inst, Tokyo 1500001, Japan
关键词
systems biology; gene network; high-throughput measurement; robustness;
D O I
10.1007/s00294-002-0285-z
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
With the ever-increasing flow of high-throughput gene expression, protein interaction and genome sequence data, researchers gradually approach a system-level understanding of cells and even multi-cellular organisms. Systems biology is an emerging field that enables us to achieve in-depth understanding at the system level. For this, we need to establish methodologies and techniques that enable us to understand biological systems as systems, which means to understand: (1) the structure of the system, such as gene/metabolic/signal transduction networks and physical structures, (2) the dynamics of such systems, (3) methods to control systems, and (4) methods to design and modify systems to generate desired properties. However, the meaning of "system-level understanding" is still ambiguous. This paper reviews the current status of the field and outlines future research directions and issues that need to be addressed.
引用
收藏
页码:1 / 10
页数:10
相关论文
共 58 条
[1]  
Akutsu T, 1999, Pac Symp Biocomput, P17
[2]   Robustness in bacterial chemotaxis [J].
Alon, U ;
Surette, MG ;
Barkai, N ;
Leibler, S .
NATURE, 1999, 397 (6715) :168-171
[3]  
ANDERSON R, 2000, NUCLEIC ACIDS RES, P28
[4]  
[Anonymous], 1969, GEN SYSTEM THEORY
[5]  
[Anonymous], [No title captured]
[6]  
Arkin A, 1998, GENETICS, V149, P1633
[7]   Generation of oscillations by the p53-Mdm2 feedback loop: A theoretical and experimental study [J].
Bar-Or, RL ;
Maya, R ;
Segel, LA ;
Alon, U ;
Levine, AJ ;
Oren, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2000, 97 (21) :11250-11255
[8]   Robustness in simple biochemical networks [J].
Barkai, N ;
Leibler, S .
NATURE, 1997, 387 (6636) :913-917
[9]   Bifurcation analysis of a model of mitotic control in frog eggs [J].
Borisuk, MT ;
Tyson, JJ .
JOURNAL OF THEORETICAL BIOLOGY, 1998, 195 (01) :69-85
[10]   Receptor clustering as a cellular mechanism to control sensitivity [J].
Bray, D ;
Levin, MD ;
Morton-Firth, CJ .
NATURE, 1998, 393 (6680) :85-88