Rotamer libraries in the 21st century

被引：525

作者：

Dunbrack, RL ^{[1
]}

机构：

[1] Fox Chase Canc Ctr, Inst Canc Res, Philadelphia, PA 19111 USA

来源：

CURRENT OPINION IN STRUCTURAL BIOLOGY | 2002年 / 12卷 / 04期

关键词：

D O I：

10.1016/S0959-440X(02)00344-5

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

Rotamer libraries are widely used in protein structure prediction, protein design and structure refinement. As the size of the structure database has increased rapidly in recent years, it has become possible to derive well-refined rotamer libraries using strict criteria for data inclusion and to study the dependence of rotamer populations and dihedral angles on local structural features.

引用

页码：431 / 440

页数：10

共 77 条

[1] Bates PA, 1999, PROTEINS, P47
[2] BENEDETTI E, 1983, INT J PEPT PROT RES, V22, P1
[3] BHAT TN, 1979, INT J PEPT PROT RES, V13, P170
[4] Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: A new homology modeling tool
Bower, MJ
Cohen, FE
Dunbrack, RL
[J]. JOURNAL OF MOLECULAR BIOLOGY, 1997, 267 (05) : 1268 - 1282
[5] Main-chain conformational features at different conformations of the side-chains in proteins
Chakrabarti, P
Pal, D
[J]. PROTEIN ENGINEERING, 1998, 11 (08): : 631 - 647
[6] The interrelationships of side-chain and main-chain conformations in proteins
Chakrabarti, P
Pal, D
[J]. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2001, 76 (1-2) : 1 - 102
[7] CHANDRASEKARAN R, 1970, INT J PROT RES, V2, P223
[8] χ1 Rotamer populations and angles of mobile surface side chains are accurately predicted by a torsion angle database potential of mean force
Clore, GM
Kuszewski, J
[J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2002, 124 (12) : 2866 - 2867
[9] Creamer TP, 2000, PROTEINS, V40, P443, DOI 10.1002/1097-0134(20000815)40:3<443::AID-PROT100>3.0.CO
[10] 2-L

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