Effect of spontaneous curvature and sequence disorder on cyclization of fluctuating filaments

被引:11
作者
Rappaport, S [1 ]
Rabin, Y [1 ]
机构
[1] Bar Ilan Univ, Dept Phys, IL-52900 Ramat Gan, Israel
关键词
D O I
10.1021/ma048320g
中图分类号
O63 [高分子化学(高聚物)];
学科分类号
070305 ; 080501 ; 081704 ;
摘要
The effect of parameters such as spontaneous curvature and elastic constants of DNA on the conformational properties of the molecules was analyzed. DNA was modeled as a continuous filament which had bending and twist rigidity as well as spontaneous curvature. It was observed that formation of loop was strongly enhanced by the introduction of nonvanishing spontaneous curvature. It was also observed that two independent random distributions of spontaneous curvature gave essentially identical probability of cyclization. The results show that mean curvature determine the looping probability of DNA fragments.
引用
收藏
页码:7847 / 7849
页数:3
相关论文
共 36 条
[1]   From the sequence to the superstructural properties of DNAs [J].
Anselmi, C ;
De Santis, R ;
Paparcone, R ;
Savino, M ;
Scipioni, A .
BIOPHYSICAL CHEMISTRY, 2002, 95 (01) :23-47
[2]   Elastic rod model of a DNA loop in the lac operon [J].
Balaeff, A ;
Mahadevan, L ;
Schulten, K .
PHYSICAL REVIEW LETTERS, 1999, 83 (23) :4900-4903
[3]   TWIST AND WRITHE OF A DNA LOOP CONTAINING INTRINSIC BENDS [J].
BAUER, WR ;
LUND, RA ;
WHITE, JH .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (03) :833-837
[4]   DETERMINATION OF DNA PERSISTENCE LENGTH BY CRYOELECTRON MICROSCOPY - SEPARATION OF THE STATIC AND DYNAMIC CONTRIBUTIONS TO THE APPARENT PERSISTENCE LENGTH OF DNA [J].
BEDNAR, J ;
FURRER, P ;
KATRITCH, V ;
STASIAK, AZ ;
DUBOCHET, J ;
STASIAK, A .
JOURNAL OF MOLECULAR BIOLOGY, 1995, 254 (04) :579-591
[5]   ELASTIC MODEL OF SUPERCOILING [J].
BENHAM, CJ .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1977, 74 (06) :2397-2401
[6]   Spontaneous sharp bending of double-stranded DNA [J].
Cloutier, TE ;
Widom, J .
MOLECULAR CELL, 2004, 14 (03) :355-362
[7]  
CROTHERS DM, 1992, METHOD ENZYMOL, V212, P2
[8]  
DEGENNES P, 1979, SCALING CONCEPTS POL, P40
[9]  
DLAKIC M, 1995, J BIOL CHEM, V270, P29945
[10]   H-NS: A universal regulator for a dynamic genome [J].
Dorman, CJ .
NATURE REVIEWS MICROBIOLOGY, 2004, 2 (05) :391-400