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A consensus epitope prediction approach identifies the breadth of murine TCD8+-cell responses to vaccinia virus
被引:424
作者:

Moutaftsi, Magdalini
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机构: La Jolla Inst Allergy & Immunol, San Diego, CA 92109 USA

Peters, Bjoern
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机构: La Jolla Inst Allergy & Immunol, San Diego, CA 92109 USA

Pasquetto, Valerie
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机构: La Jolla Inst Allergy & Immunol, San Diego, CA 92109 USA

Tscharke, David C.
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Sidney, John
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Bui, Huynh-Hoa
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Grey, Howard
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[1] La Jolla Inst Allergy & Immunol, San Diego, CA 92109 USA
[2] Queensland Inst Med Res, Div Infect Dis & Immunol, Herston, Qld 4006, Australia
关键词:
D O I:
10.1038/nbt1215
中图分类号:
Q81 [生物工程学(生物技术)];
Q93 [微生物学];
学科分类号:
071005 ;
0836 ;
090102 ;
100705 ;
摘要:
The value of predictive algorithms for identifying CD8+ T (TCD8+)-cell epitopes has not been adequately tested experimentally. Here we demonstrate that conventional bioinformatic methods predict the vast majority of TCD8+-cell epitopes derived from vaccinia virus WR strain (VACV-WR) in the H-2(b) mouse model. This approach reveals the breadth of T-cell responses to vaccinia, a widely studied murine viral infection model, and may provide a tool for developing comprehensive antigenic maps of any complex pathogen.
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页码:817 / 819
页数:3
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