Regulation of DNA Methylation Patterns by CK2-Mediated Phosphorylation of Dnmt3a

被引:72
作者
Deplus, Rachel [1 ]
Blanchon, Loic [1 ]
Rajavelu, Arumugam [2 ]
Boukaba, Abdelhalim [1 ]
Defrance, Matthieu [1 ]
Luciani, Judith [1 ]
Rothe, Francoise [3 ]
Dedeurwaerder, Sarah [1 ]
Denis, Helene [1 ]
Brinkman, Arie B. [4 ]
Simmer, Femke [4 ]
Mueller, Fabian [7 ]
Bertin, Benjamin [1 ]
Berdasco, Maria
Putmans, Pascale [1 ]
Calonne, Emilie [1 ]
Litchfield, David W. [9 ]
de Launoit, Yvan [10 ,11 ]
Jurkowski, Tomasz P. [2 ]
Stunnenberg, Hendrik G. [4 ]
Bock, Christoph [5 ,6 ,7 ]
Sotiriou, Christos [3 ]
Fraga, Mario F. [12 ,13 ]
Esteller, Manel [8 ,14 ,15 ]
Jeltsch, Albert [2 ]
Fuks, Francois [1 ]
机构
[1] Univ Libre Bruxelles, Fac Med, Lab Canc Epigenet, B-1070 Brussels, Belgium
[2] Univ Stuttgart, Inst Biochem, D-70569 Stuttgart, Germany
[3] Univ Libre Bruxelles, Inst Jules Bordet, Breast Canc Translat Res Lab JC Heuson, B-1000 Brussels, Belgium
[4] Radboud Univ Nijmegen, Nijmegen Ctr Mol Life Sci, NL-6500 HB Nijmegen, Netherlands
[5] Austrian Acad Sci, CeMM Res Ctr Mol Med, A-1090 Vienna, Austria
[6] Med Univ Vienna, Dept Lab Med, A-1090 Vienna, Austria
[7] Max Planck Inst Informat, D-66123 Saarbrucken, Germany
[8] Hosp Llobregat, Bellvitge Biomed Res Inst IDIBELL, Canc Epigenet & Biol Program PEBC, Barcelona 08907, Catalonia, Spain
[9] Univ Western Ontario, Schulich Sch Med & Dent, Dept Biochem, London, ON N6A 5C1, Canada
[10] Univ Lille 1, Inst Pasteur Lille, CNRS, UMR 8161, F-59021 Lille, France
[11] Univ Lille 2, Inst Biol Lille, F-59021 Lille, France
[12] Inst Univ Oncol Principado Asturias, CSIC, CNB, Oviedo 33006, Spain
[13] Inst Univ Oncol Principado Asturias, Unidad Epigenet Canc, Oviedo 33006, Spain
[14] Univ Barcelona, Sch Med, Dept Physiol Sci 2, Barcelona 08036, Catalonia, Spain
[15] ICREA, Barcelona 08010, Catalonia, Spain
关键词
PROTEIN-KINASE CK2; DE-NOVO METHYLATION; METHYLTRANSFERASE DNMT3A; HUMAN GENOME; PWWP DOMAIN; EXPRESSION; IMPACT; TRIMETHYLATION; TRANSCRIPTION; PREFERENCE;
D O I
10.1016/j.celrep.2014.06.048
中图分类号
Q2 [细胞生物学];
学科分类号
071013 [干细胞生物学];
摘要
DNA methylation is a central epigenetic modification that is established by de novo DNA methyl-transferases. The mechanisms underlying the generation of genomic methylation patterns are still poorly understood. Using mass spectrometry and a phosphospecific Dnmt3a antibody, we demonstrate that CK2 phosphorylates endogenous Dnmt3a at two key residues located near its PWWP domain, thereby downregulating the ability of Dnmt3a to methylate DNA. Genome-wide DNA methylation analysis shows that CK2 primarily modulates CpG methylation of several repeats, most notably of Alu SINEs. This modulation can be directly attributed to CK2-mediated phosphorylation of Dnmt3a. We also find that CK2-mediated phosphorylation is required for localization of Dnmt3a to heterochromatin. By revealing phosphorylation as a mode of regulation of de novo DNA methyltransferase function and by uncovering a mechanism for the regulation of methylation at repetitive elements, our results shed light on the origin of DNA methylation patterns.
引用
收藏
页码:743 / 753
页数:11
相关论文
共 40 条
[1]
PROTEIN KINASES .4. PROTEIN-KINASE CK2 - AN ENZYME WITH MULTIPLE SUBSTRATES AND A PUZZLING REGULATION [J].
ALLENDE, JE ;
ALLENDE, CC .
FASEB JOURNAL, 1995, 9 (05) :313-323
[2]
ALU and LINE-1 hypomethylations in multistep gastric carcinogenesis and their prognostic implications [J].
Bae, Jeong Mo ;
Shin, So-Hyun ;
Kwon, Hyeong-Ju ;
Park, Seog-Yun ;
Kook, Myeong Cherl ;
Kim, Young-Woo ;
Cho, Nam-Yun ;
Kim, Nayoung ;
Kim, Tae-You ;
Kim, Donguk ;
Kang, Gyeong Hoon .
INTERNATIONAL JOURNAL OF CANCER, 2012, 131 (06) :1323-1331
[3]
Genome-wide DNA methylation profiling using Infinium® assay [J].
Bibikova, Marina ;
Le, Jennie ;
Barnes, Bret ;
Saedinia-Melnyk, Shadi ;
Zhou, Lixin ;
Shen, Richard ;
Gunderson, Kevin L. .
EPIGENOMICS, 2009, 1 (01) :177-200
[4]
Quantitative comparison of genome-wide DNA methylation mapping technologies [J].
Bock, Christoph ;
Tomazou, Eleni M. ;
Brinkman, Arie B. ;
Mueller, Fabian ;
Simmer, Femke ;
Gu, Hongcang ;
Jaeger, Natalie ;
Gnirke, Andreas ;
Stunnenberg, Hendrik G. ;
Meissner, Alexander .
NATURE BIOTECHNOLOGY, 2010, 28 (10) :1106-U196
[5]
Molecular diagnosis of familial adenomatous polyposis (FAP):: Genotyping of adenomatous polyposis coli (APC) alleles by MALDI-TOF mass spectrometry [J].
Bonk, T ;
Humeny, A ;
Sutter, C ;
Gebert, J ;
Doeberitz, MV ;
Becker, CM .
CLINICAL BIOCHEMISTRY, 2002, 35 (02) :87-92
[6]
Myc represses transcription through recruitment of DNA methyltransferase corepressor [J].
Brenner, C ;
Deplus, R ;
Didelot, C ;
Loriot, A ;
Viré, E ;
De Smet, C ;
Gutierrez, A ;
Danovi, D ;
Bernard, D ;
Boon, T ;
Pelicci, PG ;
Amati, B ;
Kouzarides, T ;
de Launoit, Y ;
Di Croce, L ;
Fuks, F .
EMBO JOURNAL, 2005, 24 (02) :336-346
[7]
A novel Dnmt3a isoform produced from an alternative promoter localizes to euchromatin and its expression correlates with active de novo methylation [J].
Chen, TP ;
Ueda, Y ;
Xie, SP ;
Li, E .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2002, 277 (41) :38746-38754
[8]
The impact of retrotransposons on human genome evolution [J].
Cordaux, Richard ;
Batzer, Mark A. .
NATURE REVIEWS GENETICS, 2009, 10 (10) :691-703
[9]
CpG islands and the regulation of transcription [J].
Deaton, Aimee M. ;
Bird, Adrian .
GENES & DEVELOPMENT, 2011, 25 (10) :1010-1022
[10]
Regulation of mammalian DNA methyltransferases: a route to new mechanisms [J].
Denis, Helene ;
Ndlovu, Matladi N. ;
Fuks, Francois .
EMBO REPORTS, 2011, 12 (07) :647-656