VARNA: Interactive drawing and editing of the RNA secondary structure

被引:938
作者
Darty, Kevin [1 ]
Denise, Alain [1 ,2 ]
Ponty, Yann [1 ,3 ]
机构
[1] Univ Paris 11, LRI, CNRS, UMR 8623, F-91405 Orsay, France
[2] Univ Paris 11, CNRS, IGM, UMR 8621, F-91405 Orsay, France
[3] Univ Paris 06, INSERM, U511, F-75013 Paris, France
关键词
PREDICTION;
D O I
10.1093/bioinformatics/btp250
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Description: VARNA is a tool for the automated drawing, visualization and annotation of the secondary structure of RNA, designed as a companion software for web servers and databases. Features: VARNA implements four drawing algorithms, supports input/output using the classic formats dbn, ct, bpseq and RNAML and exports the drawing as five picture formats, either pixel-based (JPEG, PNG) or vector-based (SVG, EPS and XFIG). It also allows manual modi. cation and structural annotation of the resulting drawing using either an interactive point and click approach, within a web server or through command-line arguments.
引用
收藏
页码:1974 / 1975
页数:2
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