Aquatic dipterans dominate the macrozoobenthos of Lake Myvatn and the River Laxa and are important in the food web. As benthic sampling is time-consuming and expensive, a window trap was developed in order to facilitate the monitoring of the zoobenthos resource. Four window traps were operated at Myvatn and Laxa during 1977-1996. The results yielded population indices for about 20 species of chironomids and one simuliid. Numbers of the most abundant midge species showed close correlations between 2 trap sites on the lake shore, 5 km apart; Cricotopus tibialis did not show such synchrony. At the River Laxa, the dominant blackfly ( Simulium vittatum) showed correlation between 2 trap sites, at the outlet and 3 km downstream; while the chironomids, apart from Micropsectra atrofasciata, did not. The dominant midge of Lake Myvatn, Tanytarsus gracilentus showed 3 cyclic oscillations during the 20-year period. The fluctuations were tracked by Micropsectra lindrothi, Procladius islandicus, Orthocladius consobrinus, Psectrocladius barbimanus and Chironomus islandicus. A group of non-cyclic species included Cricotopus sylvestris and Orthocladius oblidens.