Statistical tests of gamma-distributed rate heterogeneity in models of sequence evolution in phylogenetics

被引：93

作者：

Goldman, N ^{[1
]}

Whelan, S ^{[1
]}

机构：

[1] Univ Cambridge, Dept Genet, Cambridge CB2 3EJ, England

来源：

MOLECULAR BIOLOGY AND EVOLUTION | 2000年 / 17卷 / 06期

关键词：

likelihood ratio tests; gamma distribution; maximum likelihood; model comparison; molecular evolution; phylogenetics;

D O I：

10.1093/oxfordjournals.molbev.a026378

中图分类号：

Q5 [生物化学]; Q7 [分子生物学];

学科分类号：

071010 ; 081704 ;

摘要：

引用

收藏

页码：975 / 978

页数：4

相关论文

共 21 条

[1] Inconsistency of the bootstrap when a parameter is on the boundary of the parameter space
Andrews, DWK
[J]. ECONOMETRICA, 2000, 68 (02) : 399 - 405
[2] [Anonymous], 1975, REPRINTING MONOGRAPH
[3] EVOLUTIONARY TREES FROM DNA-SEQUENCES - A MAXIMUM-LIKELIHOOD APPROACH
FELSENSTEIN, J
[J]. JOURNAL OF MOLECULAR EVOLUTION, 1981, 17 (06) : 368 - 376
[4] STATISTICAL TESTS OF MODELS OF DNA SUBSTITUTION
GOLDMAN, N
[J]. JOURNAL OF MOLECULAR EVOLUTION, 1993, 36 (02) : 182 - 198
[5] DATING OF THE HUMAN APE SPLITTING BY A MOLECULAR CLOCK OF MITOCHONDRIAL-DNA
HASEGAWA, M
KISHINO, H
YANO, TA
[J]. JOURNAL OF MOLECULAR EVOLUTION, 1985, 22 (02) : 160 - 174
[6] Phylogeny estimation and hypothesis testing using maximum likelihood
Huelsenbeck, JP
Crandall, KA
[J]. ANNUAL REVIEW OF ECOLOGY AND SYSTEMATICS, 1997, 28 : 437 - 466
[7] Variation in the pattern of nucleotide substitution across sites
Huelsenbeck, JP
Nielsen, R
[J]. JOURNAL OF MOLECULAR EVOLUTION, 1999, 48 (01) : 86 - 93
[8] Phylogenetic methods come of age: Testing hypotheses in an evolutionary context
Huelsenbeck, JP
Rannala, B
[J]. SCIENCE, 1997, 276 (5310) : 227 - 232
[9] Jukes T. H., 1969, MAMMALIAN PROTEIN ME, P121, DOI DOI 10.1016/B978-1-4832-3211-9.50009-7
[10] A SIMPLE METHOD FOR ESTIMATING EVOLUTIONARY RATES OF BASE SUBSTITUTIONS THROUGH COMPARATIVE STUDIES OF NUCLEOTIDE-SEQUENCES
KIMURA, M
[J]. JOURNAL OF MOLECULAR EVOLUTION, 1980, 16 (02) : 111 - 120