Using the World Wide Web for predicting CTL epitopes

被引:39
作者
Nussbaum, AK
Kuttler, C
Tenzer, S
Schild, H
机构
[1] Scripps Res Inst, Dept Neuropathol, La Jolla, CA 92037 USA
[2] Univ Tubingen, D-72076 Tubingen, Germany
[3] Univ Tubingen, Dept Immunol, Inst Cell Biol, D-72076 Tubingen, Germany
关键词
D O I
10.1016/S0952791502000043
中图分类号
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号
100102 ;
摘要
The development of vaccines and also of methods for the monitoring of cytotoxic T lymphocyte (CTL) responses depends on the identification of epitopes from immunologically relevant antigens. Detailed information about the rules that govern the interactions of peptides with MHC class I molecules, together with an increasing knowledge about the cleavage specificities of proteasomes, has paved the way for the development of computer programs that can predict CTL epitopes. The combination of such programs is likely to speed up the identification of CD8(+) T cell epitopes relevant for immune responses to infectious diseases and cancer.
引用
收藏
页码:69 / 74
页数:6
相关论文
共 28 条
[1]   Sequence signals for generation of antigenic peptides by the proteasome: Implications for proteasomal cleavage mechanism [J].
Altuvia, Y ;
Margalit, H .
JOURNAL OF MOLECULAR BIOLOGY, 2000, 295 (04) :879-890
[2]   Proteasome-assisted identification of a SSX-2-derived epitope recognized by tumor-reactive CTL infiltrating metastatic melanoma [J].
Ayyoub, M ;
Stevanovic, S ;
Sahin, U ;
Guillaume, P ;
Servis, C ;
Rimoldi, D ;
Valmori, D ;
Romero, P ;
Cerottini, JC ;
Rammensee, HG ;
Pfreundschuh, M ;
Speiser, D ;
Lévy, F .
JOURNAL OF IMMUNOLOGY, 2002, 168 (04) :1717-1722
[3]   Interferon-γ can stimulate post-proteasomal trimming of the N terminus of an antigenic peptide by inducing leucine aminopeptidase [J].
Beninga, J ;
Rock, KL ;
Goldberg, AL .
JOURNAL OF BIOLOGICAL CHEMISTRY, 1998, 273 (30) :18734-18742
[4]   The immunogenicity of a new human minor histocompatibility antigen results from differential antigen processing [J].
Brickner, AG ;
Warren, EH ;
Caldwell, JA ;
Akatsuka, Y ;
Golovina, TN ;
Zarling, AL ;
Shabanowitz, J ;
Eisenlohr, LC ;
Hunt, DF ;
Engelhard, VH ;
Riddell, SR .
JOURNAL OF EXPERIMENTAL MEDICINE, 2001, 193 (02) :195-205
[5]   The human 26 S and 20 S proteasomes generate overlapping but different sets of peptide fragments from a model protein substrate [J].
Emmerich, NPN ;
Nussbaum, AK ;
Stevanovic, S ;
Priemer, M ;
Toes, REM ;
Rammensee, HG ;
Schild, H .
JOURNAL OF BIOLOGICAL CHEMISTRY, 2000, 275 (28) :21140-21148
[6]   AIDS - Diversity considerations in HIV-1 vaccine selection [J].
Gaschen, B ;
Taylor, J ;
Yusim, K ;
Foley, B ;
Gao, F ;
Lang, D ;
Novitsky, V ;
Haynes, B ;
Hahn, BH ;
Bhattacharya, T ;
Korber, B .
SCIENCE, 2002, 296 (5577) :2354-2360
[7]   A giant protease with potential to substitute for some functions of the proteasome [J].
Geier, E ;
Pfeifer, G ;
Wilm, M ;
Lucchiari-Hartz, M ;
Baumeister, W ;
Eichmann, K ;
Niedermann, G .
SCIENCE, 1999, 283 (5404) :978-981
[8]   A theoretical approach towards the identification of cleavage-determining amino acid motifs of the 20 S proteasome. [J].
Holzhütter, HG ;
Frömmel, C ;
Kloetzel, PM .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 286 (04) :1251-1265
[9]   A kinetic model of vertebrate 20S proteasome accounting for the generation of major proteolytic fragments from oligomeric peptide substrates [J].
Holzhütter, HG ;
Kloetzel, PM .
BIOPHYSICAL JOURNAL, 2000, 79 (03) :1196-1205
[10]   Prediction of proteasome cleavage motifs by neural networks [J].
Kesmir, C ;
Nussbaum, AK ;
Schild, H ;
Detours, V ;
Brunak, S .
PROTEIN ENGINEERING, 2002, 15 (04) :287-296