The need for guidelines in publication of peptide and protein identification data - Working group on publication guidelines for peptide and protein identification data

被引:372
作者
Carr, S
Aebersold, R
Baldwin, M
Burlingame, A
Clauser, K
Nesvizhskii, A
机构
[1] Broad Inst, Cambridge, MA 02139 USA
[2] Inst Syst Biol, Seattle, WA 98103 USA
[3] Univ Calif San Francisco, San Francisco, CA 94143 USA
[4] Millennium Pharmaceut, Cambridge, MA 02139 USA
关键词
D O I
10.1074/mcp.T400006-MCP200
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
引用
收藏
页码:531 / 533
页数:3
相关论文
共 11 条
[1]   A new algorithm for the evaluation of shotgun peptide sequencing in proteomics: Support vector machine classification of peptide MS/MS spectra and SEQUEST scores [J].
Anderson, DC ;
Li, WQ ;
Payan, DG ;
Noble, WS .
JOURNAL OF PROTEOME RESEARCH, 2003, 2 (02) :137-146
[2]   Protein identification by mass spectrometry - Issues to be considered [J].
Baldwin, MA .
MOLECULAR & CELLULAR PROTEOMICS, 2004, 3 (01) :1-9
[3]   Gel based isoelectric focusing of peptides and the utility of isoelectric point in protein identification [J].
Cargile, BJ ;
Bundy, JL ;
Freeman, TW ;
Stephenson, JL .
JOURNAL OF PROTEOME RESEARCH, 2004, 3 (01) :112-119
[4]   A method for assessing the statistical significance of mass spectrometry-based protein identifications using general scoring schemes [J].
Fenyö, D ;
Beavis, RC .
ANALYTICAL CHEMISTRY, 2003, 75 (04) :768-774
[5]   Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search [J].
Keller, A ;
Nesvizhskii, AI ;
Kolker, E ;
Aebersold, R .
ANALYTICAL CHEMISTRY, 2002, 74 (20) :5383-5392
[6]   PRISM, a generic large scale proteomic investigation strategy for mammals [J].
Kislinger, T ;
Rahman, K ;
Radulovic, D ;
Cox, B ;
Rossant, J ;
Emili, A .
MOLECULAR & CELLULAR PROTEOMICS, 2003, 2 (02) :96-106
[7]   Probability-based validation of protein identifications using a modified SEQUEST algorithm [J].
MacCoss, MJ ;
Wu, CC ;
Yates, JR .
ANALYTICAL CHEMISTRY, 2002, 74 (21) :5593-5599
[8]   Analysis, statistical validation and dissemination of large-scale proteomics datasets generated by tandem MS [J].
Nesvizhskii, AI ;
Aebersold, R .
DRUG DISCOVERY TODAY, 2004, 9 (04) :173-181
[9]   A statistical model for identifying proteins by tandem mass spectrometry [J].
Nesvizhskii, AI ;
Keller, A ;
Kolker, E ;
Aebersold, R .
ANALYTICAL CHEMISTRY, 2003, 75 (17) :4646-4658
[10]   Use of artificial neural networks for the accurate prediction of peptide liquid chromatography elution times in proteome analyses [J].
Petritis, K ;
Kangas, LJ ;
Ferguson, PL ;
Anderson, GA ;
Pasa-Tolic, L ;
Lipton, MS ;
Auberry, KJ ;
Strittmatter, EF ;
Shen, YF ;
Zhao, R ;
Smith, RD .
ANALYTICAL CHEMISTRY, 2003, 75 (05) :1039-1048