Genetics, genomics, and their relevance to pathology and therapy

被引:27
作者
Ombrello, Michael J. [1 ]
Sikora, Keith A. [1 ]
Kastner, Daniel L. [2 ]
机构
[1] NIAMSD, NIH, DHHS, Bethesda, MD 20892 USA
[2] NHGRI, NIH, DHHS, Bethesda, MD 20892 USA
来源
BEST PRACTICE & RESEARCH IN CLINICAL RHEUMATOLOGY | 2014年 / 28卷 / 02期
基金
美国国家卫生研究院;
关键词
Pediatric rheumatology; Somatic mosaicism; Genome-wide association study; Targeted deep resequencing; miRNA; lncRNA; WIDE ASSOCIATION ANALYSIS; LARGE NONCODING RNAS; RHEUMATOID-ARTHRITIS; SUSCEPTIBILITY LOCI; RARE VARIANTS; LOW-FREQUENCY; AUTOINFLAMMATORY DISEASE; GENOTYPE IMPUTATION; NLRP3; INFLAMMASOME; INTERFERON-GAMMA;
D O I
10.1016/j.berh.2014.05.001
中图分类号
R5 [内科学];
学科分类号
100201 [内科学];
摘要
Genetic and genomic investigations are a starting point for the study of human disease, seeking to discover causative variants relevant to disease pathophysiology. Over the past 5 years, massively parallel, high-throughput, next-generation sequencing techniques have revolutionized genetics and genomics, identifying the causes of many Mendelian diseases. The application of whole-genome sequencing and whole-exome sequencing to large populations has produced several publicly available sequence datasets that have revealed the scope of human genetic variation and have contributed to important methodological advances in the study of both common and rare genetic variants in genetically complex diseases. The importance of noncoding genetic variation has been highlighted by the Encyclopedia of DNA Elements (ENCODE) project and National Institutes of Health (NIH) Roadmap Epigenomics Program and integrated analyses of these datasets, together with disease-specific datasets, will provide an important and powerful tool for determining the mechanisms through which disease-associated, noncoding variation influences disease risk. Published by Elsevier Ltd.
引用
收藏
页码:175 / 189
页数:15
相关论文
共 98 条
[1]
Association of a functional variant downstream of TNFAIP3 with systemic lupus erythematosus [J].
Adrianto, Indra ;
Wen, Feng ;
Templeton, Amanda ;
Wiley, Graham ;
King, Jarrod B. ;
Lessard, Christopher J. ;
Bates, Jared S. ;
Hu, Yanqing ;
Kelly, Jennifer A. ;
Kaufman, Kenneth M. ;
Guthridge, Joel M. ;
Alarcon-Riquelme, Marta E. ;
Anaya, Juan-Manuel ;
Bae, Sang-Cheol ;
Bang, So-Young ;
Boackle, Susan A. ;
Brown, Elizabeth E. ;
Petri, Michelle A. ;
Gallant, Caroline ;
Ramsey-Goldman, Rosalind ;
Reveille, John D. ;
Vila, Luis M. ;
Criswell, Lindsey A. ;
Edberg, Jeffrey C. ;
Freedman, Barry I. ;
Gregersen, Peter K. ;
Gilkeson, Gary S. ;
Jacob, Chaim O. ;
James, Judith A. ;
Kamen, Diane L. ;
Kimberly, Robert P. ;
Martin, Javier ;
Merrill, Joan T. ;
Niewold, Timothy B. ;
Park, So-Yeon ;
Pons-Estel, Bernardo A. ;
Scofield, R. Hal ;
Stevens, Anne M. ;
Tsao, Betty P. ;
Vyse, Timothy J. ;
Langefeld, Carl D. ;
Harley, John B. ;
Moser, Kathy L. ;
Webb, Carol F. ;
Humphrey, Mary Beth ;
Montgomery, Courtney Gray ;
Gaffney, Patrick M. .
NATURE GENETICS, 2011, 43 (03) :253-U102
[2]
An Autoinflammatory Disease with Deficiency of the Interleukin-1-Receptor Antagonist [J].
Aksentijevich, Ivona ;
Masters, Seth L. ;
Ferguson, Polly J. ;
Dancey, Paul ;
Frenkel, Joost ;
van Royen-Kerkhoff, Annet ;
Laxer, Ron ;
Tedgard, Ulf ;
Cowen, Edward W. ;
Pham, Tuyet-Hang ;
Booty, Matthew ;
Estes, Jacob D. ;
Sandler, Netanya G. ;
Plass, Nicole ;
Stone, Deborah L. ;
Turner, Maria L. ;
Hill, Suvimol ;
Butman, John A. ;
Schneider, Rayfel ;
Babyn, Paul ;
El-Shanti, Hatem I. ;
Pope, Elena ;
Barron, Karyl ;
Bing, Xinyu ;
Laurence, Arian ;
Lee, Chyi-Chia R. ;
Chapelle, Dawn ;
Clarke, Gillian I. ;
Ohson, Kamal ;
Nicholson, Marc ;
Gadina, Massimo ;
Yang, Barbara ;
Korman, Benjamin D. ;
Gregersen, Peter K. ;
van Hagen, P. Martin ;
Hak, A. Elisabeth ;
Huizing, Marjan ;
Rahman, Proton ;
Douek, Daniel C. ;
Remmers, Elaine F. ;
Kastner, Daniel L. ;
Goldbach-Mansky, Raphaela .
NEW ENGLAND JOURNAL OF MEDICINE, 2009, 360 (23) :2426-2437
[3]
Compound inheritance of a low-frequency regulatory SNP and a rare null mutation in exon-junction complex subunit RBM8A causes TAR syndrome [J].
Albers, Cornelis A. ;
Paul, Dirk S. ;
Schulze, Harald ;
Freson, Kathleen ;
Stephens, Jonathan C. ;
Smethurst, Peter A. ;
Jolley, Jennifer D. ;
Cvejic, Ana ;
Kostadima, Myrto ;
Bertone, Paul ;
Breuning, Martijn H. ;
Debili, Najet ;
Deloukas, Panos ;
Favier, Remi ;
Fiedler, Janine ;
Hobbs, Catherine M. ;
Huang, Ni ;
Hurles, Matthew E. ;
Kiddle, Graham ;
Krapels, Ingrid ;
Nurden, Paquita ;
Ruivenkamp, Claudia A. L. ;
Sambrook, Jennifer G. ;
Smith, Kenneth ;
Stemple, Derek L. ;
Strauss, Gabriele ;
Thys, Chantal ;
van Geet, Chris ;
Newbury-Ecob, Ruth ;
Ouwehand, Willem H. ;
Ghevaert, Cedric .
NATURE GENETICS, 2012, 44 (04) :435-U248
[4]
An integrated map of genetic variation from 1,092 human genomes [J].
Altshuler, David M. ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Donnelly, Peter ;
Eichler, Evan E. ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Green, Eric D. ;
Hurles, Matthew E. ;
Knoppers, Bartha M. ;
Korbel, Jan O. ;
Lander, Eric S. ;
Lee, Charles ;
Lehrach, Hans ;
Mardis, Elaine R. ;
Marth, Gabor T. ;
McVean, Gil A. ;
Nickerson, Deborah A. ;
Schmidt, Jeanette P. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Dinh, Huyen ;
Kovar, Christie ;
Lee, Sandra ;
Lewis, Lora ;
Muzny, Donna ;
Reid, Jeff ;
Wang, Min ;
Wang, Jun ;
Fang, Xiaodong ;
Guo, Xiaosen ;
Jian, Min ;
Jiang, Hui ;
Jin, Xin ;
Li, Guoqing ;
Li, Jingxiang ;
Li, Yingrui ;
Li, Zhuo ;
Liu, Xiao ;
Lu, Yao ;
Ma, Xuedi ;
Su, Zhe ;
Tai, Shuaishuai ;
Tang, Meifang .
NATURE, 2012, 491 (7422) :56-65
[5]
Integrating common and rare genetic variation in diverse human populations [J].
Altshuler, David M. ;
Gibbs, Richard A. ;
Peltonen, Leena ;
Dermitzakis, Emmanouil ;
Schaffner, Stephen F. ;
Yu, Fuli ;
Bonnen, Penelope E. ;
de Bakker, Paul I. W. ;
Deloukas, Panos ;
Gabriel, Stacey B. ;
Gwilliam, Rhian ;
Hunt, Sarah ;
Inouye, Michael ;
Jia, Xiaoming ;
Palotie, Aarno ;
Parkin, Melissa ;
Whittaker, Pamela ;
Chang, Kyle ;
Hawes, Alicia ;
Lewis, Lora R. ;
Ren, Yanru ;
Wheeler, David ;
Muzny, Donna Marie ;
Barnes, Chris ;
Darvishi, Katayoon ;
Hurles, Matthew ;
Korn, Joshua M. ;
Kristiansson, Kati ;
Lee, Charles ;
McCarroll, Steven A. ;
Nemesh, James ;
Keinan, Alon ;
Montgomery, Stephen B. ;
Pollack, Samuela ;
Price, Alkes L. ;
Soranzo, Nicole ;
Gonzaga-Jauregui, Claudia ;
Anttila, Verneri ;
Brodeur, Wendy ;
Daly, Mark J. ;
Leslie, Stephen ;
McVean, Gil ;
Moutsianas, Loukas ;
Nguyen, Huy ;
Zhang, Qingrun ;
Ghori, Mohammed J. R. ;
McGinnis, Ralph ;
McLaren, William ;
Takeuchi, Fumihiko ;
Grossman, Sharon R. .
NATURE, 2010, 467 (7311) :52-58
[6]
NLRP3 Inflammasome Activity Is Negatively Controlled by miR-223 [J].
Bauernfeind, Franz ;
Rieger, Anna ;
Schildberg, Frank A. ;
Knolle, Percy A. ;
Schmid-Burgk, Jonathan L. ;
Hornung, Veit .
JOURNAL OF IMMUNOLOGY, 2012, 189 (08) :4175-4181
[7]
Role for a bidentate ribonuclease in the initiation step of RNA interference [J].
Bernstein, E ;
Caudy, AA ;
Hammond, SM ;
Hannon, GJ .
NATURE, 2001, 409 (6818) :363-366
[8]
Exome sequencing makes medical genomics a reality [J].
Biesecker, Leslie G. .
NATURE GENETICS, 2010, 42 (01) :13-14
[9]
Essential Role of MicroRNA-155 in the Pathogenesis of Autoimmune Arthritis in Mice [J].
Blueml, Stephan ;
Bonelli, Michael ;
Niederreiter, Birgit ;
Puchner, Antonia ;
Mayr, Georg ;
Hayer, Silvia ;
Koenders, Marije I. ;
van den Berg, Wim B. ;
Smolen, Josef ;
Redlich, Kurt .
ARTHRITIS AND RHEUMATISM, 2011, 63 (05) :1281-1288
[10]
Immunodeficiency, autoinflammation and amylopectinosis in humans with inherited HOIL-1 and LUBAC deficiency [J].
Boisson, Bertrand ;
Laplantine, Emmanuel ;
Prando, Carolina ;
Giliani, Silvia ;
Israelsson, Elisabeth ;
Xu, Zhaohui ;
Abhyankar, Avinash ;
Israel, Laura ;
Trevejo-Nunez, Giraldina ;
Bogunovic, Dusan ;
Cepika, Alma-Martina ;
MacDuff, Donna ;
Chrabieh, Maya ;
Hubeau, Marjorie ;
Bajolle, Fanny ;
Debre, Marianne ;
Mazzolari, Evelina ;
Vairo, Donatella ;
Agou, Fabrice ;
Virgin, Herbert W. ;
Bossuyt, Xavier ;
Rambaud, Caroline ;
Facchetti, Fabio ;
Bonnet, Damien ;
Quartier, Pierre ;
Fournet, Jean-Christophe ;
Pascual, Virginia ;
Chaussabel, Damien ;
Notarangelo, Luigi D. ;
Puel, Anne ;
Israel, Alain ;
Casanova, Jean-Laurent ;
Picard, Capucine .
NATURE IMMUNOLOGY, 2012, 13 (12) :1178-+