The Levinthal paradox: yesterday and today

被引:179
作者
Karplus, M [1 ]
机构
[1] HARVARD UNIV, DEPT CHEM, CAMBRIDGE, MA 02138 USA
来源
FOLDING & DESIGN | 1997年 / 2卷 / 04期
基金
美国国家科学基金会;
关键词
D O I
10.1016/S1359-0278(97)00067-9
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A change in the perception of the protein folding problem has taken place recently. The nature of the change is outlined and the reasons for it are presented. An essential element is the recognition that a bias toward the native state over much of the effective energy surface may govern the folding process. This has replaced the random search paradigm of Levinthal and suggests that there are many ways of reaching the native state in a reasonable time so that a specific pathway does not have to be postulated. The change in perception is due primarily to the application of statistical mechanical models and lattice simulations to protein folding. Examples of lattice model results on protein folding are presented. It is pointed out that the new optimism about the protein folding problem must be complemented by more detailed studies to determine the structural and energetic factors that introduce the biases which make possible the folding of real proteins.
引用
收藏
页码:S69 / S75
页数:7
相关论文
共 74 条
[1]   DOMAINS IN FOLDING OF MODEL PROTEINS [J].
ABKEVICH, VI ;
GUTIN, AM ;
SHAKHNOVICH, EI .
PROTEIN SCIENCE, 1995, 4 (06) :1167-1177
[2]   PROTEIN-FOLDING - MATCHING SPEED AND STABILITY [J].
BALDWIN, RL .
NATURE, 1994, 369 (6477) :183-184
[4]   PROTEIN CHEMISTRY - PIECES OF THE FOLDING PUZZLE [J].
BALDWIN, RL .
NATURE, 1990, 346 (6283) :409-410
[5]   Direct observation of fast protein folding: The initial collapse of apomyoglobin [J].
Ballew, RM ;
Sabelko, J ;
Gruebele, M .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1996, 93 (12) :5759-5764
[6]   DIFFUSION-COLLISION MODEL FOR THE FOLDING KINETICS OF THE LAMBDA-REPRESSOR OPERATOR-BINDING DOMAIN [J].
BASHFORD, D ;
WEAVER, DL ;
KARPLUS, M .
JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1984, 1 (05) :1243-1255
[7]   DIFFUSION-COLLISION MODEL FOR THE FOLDING KINETICS OF MYOGLOBIN [J].
BASHFORD, D ;
COHEN, FE ;
KARPLUS, M ;
KUNTZ, ID ;
WEAVER, DL .
PROTEINS-STRUCTURE FUNCTION AND GENETICS, 1988, 4 (03) :211-227
[8]   FIRST-PRINCIPLES CALCULATION OF THE FOLDING FREE-ENERGY OF A 3-HELIX BUNDLE PROTEIN [J].
BOCZKO, EM ;
BROOKS, CL .
SCIENCE, 1995, 269 (5222) :393-396
[9]  
Brooks C. L., 1988, PROTEINS THEORETICAL
[10]   FUNNELS, PATHWAYS, AND THE ENERGY LANDSCAPE OF PROTEIN-FOLDING - A SYNTHESIS [J].
BRYNGELSON, JD ;
ONUCHIC, JN ;
SOCCI, ND ;
WOLYNES, PG .
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 1995, 21 (03) :167-195