The application of SSRs characterized for grape (Vitis vinifera) to conservation studies in Vitaceae

被引:52
作者
Arnold, C [1 ]
Rossetto, M [1 ]
McNally, J [1 ]
Henry, RJ [1 ]
机构
[1] So Cross Univ, Ctr Plant Conservat Genet, Lismore, NSW 2480, Australia
关键词
Cissus; microsatellites; SSR loci transfer; Vitis; Vitaceae;
D O I
10.3732/ajb.89.1.22
中图分类号
Q94 [植物学];
学科分类号
071001 ;
摘要
The use of microsatellite loci developed from a single plant species across a number of related taxa is becoming increasingly widespread. This approach can provide highly informative markers even for species for which nucrosatellites have not been characterized. As a number of expressed sequence tag (EST)-derived and enrichment-derived microsatellites are available for grape (Vitis vinifera), this study set out to assess transferability of nine such loci across 25 species from five different Vitaceae genera Intergeneric transfer success in Vitaceae was high (51.1%) and EST-derived loci performed better than enrichment-derived loci Six loci were further tested across two Australian native species, Cissus hypoglauca and C. sterculufolia, in order to assess the conservation of microsatellite repeats and their flanking sequences. Polymorphism of these selected loci was successfully tested for each species across a small, isolated rain forest population from northern New South Wales (Australia). Results from this preliminary investigation suggest that it is possible to use grape-derived simple sequence repeats (SSR) loci for population studies on Vitaceae. As Vitaceae are an important component of rain forest flora, the availability of such highly informative loci will be beneficial to future studies aimed at determining the genetic consequences of rain forest fragmentation.
引用
收藏
页码:22 / 28
页数:7
相关论文
共 22 条
  • [1] Analysis of grape ESTs: global gene expression patterns in leaf and berry
    Ablett, E
    Seaton, G
    Scott, K
    Shelton, D
    Graham, MW
    Baverstock, P
    Lee, LS
    Henry, R
    [J]. PLANT SCIENCE, 2000, 159 (01) : 87 - 95
  • [2] Isolation and characterization of new polymorphic simple sequence repeat loci in grape (Vitis vinifera L)
    Bowers, JE
    Dangl, GS
    Vignani, R
    Meredith, CP
    [J]. GENOME, 1996, 39 (04) : 628 - 633
  • [3] Multiple methods for the identification of polymorphic simple sequence repeats (SSRs) in sorghum [Sorghum bicolor (L) Moench]
    Brown, SM
    Hopkins, MS
    Mitchell, SE
    Senior, ML
    Wang, TY
    Duncan, RR
    GonzalezCandelas, F
    Kresovich, S
    [J]. THEORETICAL AND APPLIED GENETICS, 1996, 93 (1-2) : 190 - 198
  • [4] Comparative study of genetic variation and differentiation of two pedunculate oak (Quercus robur) stands using microsatellite and allozyme loci
    Degen, B
    Streiff, R
    Ziegenhagen, B
    [J]. HEREDITY, 1999, 83 (5) : 597 - 603
  • [5] Edwards KJ, 1996, BIOTECHNIQUES, V20, P758
  • [6] Microsatellite enrichment in organisms with large genomes (Allium cepa L.)
    Fischer, D
    Bachmann, K
    [J]. BIOTECHNIQUES, 1998, 24 (05) : 796 - +
  • [7] Galet P, 1967, THESIS U MONTPELLIER
  • [8] JACKES B R, 1988, Austrobaileya, V2, P481
  • [9] EDGE EFFECTS IN TROPICAL FOREST FRAGMENTS - APPLICATION OF A MODEL FOR THE DESIGN OF NATURE-RESERVES
    LAURANCE, WF
    [J]. BIOLOGICAL CONSERVATION, 1991, 57 (02) : 205 - 219
  • [10] MABBERLEY DJ, 1995, REVISED HDB FLORA CE, P446