A TROSY CPMG sequence for characterizing chemical exchange in large proteins

被引:201
作者
Loria, JP
Rance, M
Palmer, AG
机构
[1] Columbia Univ, Dept Biochem & Mol Biophys, New York, NY 10032 USA
[2] Univ Cincinnati, Coll Med, Dept Mol Genet Biochem & Microbiol, Cincinnati, OH 45267 USA
关键词
BPTI; chemical exchange; CPMG; triosephosphate isomerase; TROSY;
D O I
10.1023/A:1008355631073
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
A new NMR spin relaxation experiment is described for measuring chemical exchange time constants from approximately 0.5 ms to 5 ms in N-15-labeled macromolecules. The pulse sequence is based on the Carr-Purcell-Meiboom-Gill technique [Carr and Purcell (1954) Phys. Rev., 94, 630-638; Meiboom and Gill (1958) Rev. Sci. Instrum., 29, 688-691; Loria et al. (1999) J. Am. Chem. Soc., 121, 2331-2332], but implements TROSY selection [Pervushin et al. (1997) Proc. Natl. Acad. Sci. USA, 94, 12366-12371] to permit measurement of exchange linebroadening contributions to the narrower component of the H-1-N-15 scalar-coupled doublet. This modification extends the size limitation imposed on relaxation measurements due to the fast decay of transverse magnetization in larger macromolecules. The new TROSY-CPMG experiment is demonstrated on a [U-98% N-15] labeled sample of basic pancreatic trypsin inhibitor and a [U-83% H-2, U-98% N-15] labeled sample of triosephosphate isomerase, a 54 kDa homodimeric protein.
引用
收藏
页码:151 / 155
页数:5
相关论文
共 34 条
[1]   Monitoring macromolecular motions on microsecond to millisecond time scales by R(1)rho-R(1) constant relaxation time NMR spectroscopy [J].
Akke, M ;
Palmer, AG .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1996, 118 (04) :911-912
[2]   ON THE 3-DIMENSIONAL STRUCTURE AND CATALYTIC MECHANISM OF TRIOSE PHOSPHATE ISOMERASE [J].
ALBER, T ;
BANNER, DW ;
BLOOMER, AC ;
PETSKO, GA ;
PHILLIPS, D ;
RIVERS, PS ;
WILSON, IA .
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES, 1981, 293 (1063) :159-171
[3]  
[Anonymous], 1977, DATA ANAL REGRESSION
[4]   SENSITIVITY IMPROVEMENT IN PROTON-DETECTED 2-DIMENSIONAL HETERONUCLEAR RELAY SPECTROSCOPY [J].
CAVANAGH, J ;
PALMER, AG ;
WRIGHT, PE ;
RANCE, M .
JOURNAL OF MAGNETIC RESONANCE, 1991, 91 (02) :429-436
[5]   STRUCTURE OF THE TRIOSEPHOSPHATE ISOMERASE PHOSPHOGLYCOLOHYDROXAMATE COMPLEX - AN ANALOG OF THE INTERMEDIATE ON THE REACTION PATHWAY [J].
DAVENPORT, RC ;
BASH, PA ;
SEATON, BA ;
KARPLUS, M ;
PETSKO, GA ;
RINGE, D .
BIOCHEMISTRY, 1991, 30 (24) :5821-5826
[6]   DIRECT MEASUREMENTS OF THE DISSOCIATION-RATE CONSTANT FOR INHIBITOR-ENZYME COMPLEXES VIA THE T-1-RHO AND T-2 (CPMG) METHODS [J].
DAVIS, DG ;
PERLMAN, ME ;
LONDON, RE .
JOURNAL OF MAGNETIC RESONANCE SERIES B, 1994, 104 (03) :266-275
[7]   STUDIES OF CHEMICAL EXCHANGE BY NUCLEAR MAGNETIC RELAXATION IN ROTATING FRAME [J].
DEVERELL, C ;
MORGAN, RE ;
STRANGE, JH .
MOLECULAR PHYSICS, 1970, 18 (04) :553-&
[8]   Local mobility of 15N labeled biomolecules characterized through cross-correlation rates:: Applications to paramagnetic proteins [J].
Felli, IC ;
Desvaux, H ;
Bodenhausen, G .
JOURNAL OF BIOMOLECULAR NMR, 1998, 12 (04) :509-521
[9]   THE ENERGY LANDSCAPES AND MOTIONS OF PROTEINS [J].
FRAUENFELDER, H ;
SLIGAR, SG ;
WOLYNES, PG .
SCIENCE, 1991, 254 (5038) :1598-1603
[10]   N-15 CHEMICAL-SHIFTS OF BACKBONE AMIDES IN BOVINE PANCREATIC TRYPSIN-INHIBITOR AND APAMIN [J].
GLUSHKA, J ;
LEE, M ;
COFFIN, S ;
COWBURN, D .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1989, 111 (20) :7716-7722